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<< GeneValidatorApp::Database
#[] GeneValidatorApp::Config
[] GeneValidatorApp::Database
#[]= GeneValidatorApp::Config
all GeneValidatorApp::Database
#app GeneValidatorApp::Server
#call GeneValidatorApp::Logger::Formatter
call GeneValidatorApp
#cmd GeneValidatorApp::BLAST_DATABASE_ERROR
collection GeneValidatorApp::Database
config GeneValidatorApp
#config_file GeneValidatorApp::Config
#data GeneValidatorApp::Config
#database_dir GeneValidatorApp::NO_BLAST_DATABASE_FOUND
#database_dir GeneValidatorApp::NO_PROTEIN_BLAST_DATABASE_FOUND
default_db GeneValidatorApp::Database
#des GeneValidatorApp::ENOENT
each GeneValidatorApp::Database
#ent GeneValidatorApp::ENOENT
#ent GeneValidatorApp::CONFIG_FILE_ERROR
environment GeneValidatorApp
#err GeneValidatorApp::CONFIG_FILE_ERROR
first GeneValidatorApp::Database
group_by GeneValidatorApp::Database
gv_dir GeneValidatorApp::RunGeneValidator
#id GeneValidatorApp::Database
ids GeneValidatorApp::Database
#include? GeneValidatorApp::Config
include? GeneValidatorApp::Database
init GeneValidatorApp::RunGeneValidator
init GeneValidatorApp
#initialize GeneValidatorApp::Logger::Formatter
#initialize GeneValidatorApp::Logger
#initialize GeneValidatorApp::Server
#initialize GeneValidatorApp::BLAST_NOT_COMPATIBLE
#initialize GeneValidatorApp::Config
#initialize GeneValidatorApp::BIN_DIR_NOT_FOUND
#initialize GeneValidatorApp::NO_BLAST_DATABASE_FOUND
#initialize GeneValidatorApp::BLAST_DATABASE_ERROR
#initialize GeneValidatorApp::Database
#initialize GeneValidatorApp::EXTENSION_FILE_NOT_FOUND
#initialize GeneValidatorApp::NO_PROTEIN_BLAST_DATABASE_FOUND
#initialize GeneValidatorApp::DATABASE_DIR_NOT_FOUND
#initialize GeneValidatorApp::ENOENT
#initialize GeneValidatorApp::CONFIG_FILE_ERROR
input_file GeneValidatorApp::RunGeneValidator
logger GeneValidatorApp
multipart_database_name? GeneValidatorApp::Database
#name GeneValidatorApp::Database
non_default_dbs GeneValidatorApp::Database
obtain_original_structure GeneValidatorApp::Database
on_start GeneValidatorApp
on_stop GeneValidatorApp
#options GeneValidatorApp::Server
#out GeneValidatorApp::BLAST_DATABASE_ERROR
params GeneValidatorApp::RunGeneValidator
public_dir GeneValidatorApp
raw_seq GeneValidatorApp::RunGeneValidator
root GeneValidatorApp
run GeneValidatorApp::RunGeneValidator
run GeneValidatorApp::Server
run GeneValidatorApp
scan_databases_dir GeneValidatorApp::Database
ssl? GeneValidatorApp
#start GeneValidatorApp::Server
#stop GeneValidatorApp::Server
temp_dir GeneValidatorApp
#title GeneValidatorApp::Database
#to_s GeneValidatorApp::BLAST_NOT_INSTALLED
#to_s GeneValidatorApp::MAFFT_NOT_INSTALLED
#to_s GeneValidatorApp::BLAST_NOT_EXECUTABLE
#to_s GeneValidatorApp::ENOENT
#to_s GeneValidatorApp::NUM_THREADS_INCORRECT
#to_s GeneValidatorApp::CONFIG_FILE_ERROR
#to_s GeneValidatorApp::Database
#to_s GeneValidatorApp::BLAST_NOT_COMPATIBLE
#to_s GeneValidatorApp::DATABASE_DIR_NOT_SET
#to_s GeneValidatorApp::NO_PROTEIN_BLAST_DATABASE_FOUND
#to_s GeneValidatorApp::NO_BLAST_DATABASE_FOUND
#to_s GeneValidatorApp::BLAST_DATABASE_ERROR
#type GeneValidatorApp::Database
unique_id GeneValidatorApp::RunGeneValidator
verbose? GeneValidatorApp
#version GeneValidatorApp::BLAST_NOT_COMPATIBLE
#write_config_file GeneValidatorApp::Config
xml_file GeneValidatorApp::RunGeneValidator