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#alnlen CRB_Blast::Hit
#bitscore CRB_Blast::Hit
#clear_memory CRB_Blast::CRB_Blast
#cmd CRB_Blast::Cmd
#evalue CRB_Blast::Hit
#find_reciprocals CRB_Blast::CRB_Blast
#find_secondaries CRB_Blast::CRB_Blast
#gaps CRB_Blast::Hit
#has_reciprocal? CRB_Blast::CRB_Blast
#id CRB_Blast::Hit
#initialize CRB_Blast::CRB_Blast
#initialize CRB_Blast::Cmd
#initialize CRB_Blast::Hit
#isNucl? Bio::FastaFormat
#isProt? Bio::FastaFormat
#load_outputs CRB_Blast::CRB_Blast
#makedb CRB_Blast::CRB_Blast
#mismatches CRB_Blast::Hit
#missed CRB_Blast::CRB_Blast
#qend CRB_Blast::Hit
#qlen CRB_Blast::Hit
#qprot CRB_Blast::Hit
#qstart CRB_Blast::Hit
#query CRB_Blast::Hit
#query_is_prot CRB_Blast::CRB_Blast
#query_name CRB_Blast::CRB_Blast
#query_results CRB_Blast::CRB_Blast
#reciprocal_hits CRB_Blast::CRB_Blast
#reciprocals CRB_Blast::CRB_Blast
#run CRB_Blast::CRB_Blast
#run CRB_Blast::Cmd
#run_blast CRB_Blast::CRB_Blast
#run_blast_with_splitting CRB_Blast::CRB_Blast
#run_blast_with_threads CRB_Blast::CRB_Blast
#size CRB_Blast::CRB_Blast
#split_input CRB_Blast::CRB_Blast
#status CRB_Blast::Cmd
#stderr CRB_Blast::Cmd
#stdout CRB_Blast::Cmd
#target CRB_Blast::Hit
#target_is_prot CRB_Blast::CRB_Blast
#target_name CRB_Blast::CRB_Blast
#target_results CRB_Blast::CRB_Blast
#tend CRB_Blast::Hit
#tidy_up CRB_Blast::CRB_Blast
#tlen CRB_Blast::Hit
#to_s CRB_Blast::Hit
#tprot CRB_Blast::Hit
#tstart CRB_Blast::Hit
#working_dir CRB_Blast::CRB_Blast
#write_output CRB_Blast::CRB_Blast