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Top Level Namespace
ActiveSupportTop Level Namespace
- HashWithIndifferentAccess < HashActiveSupport
- MultibyteActiveSupport
  - Chars < ObjectActiveSupport::Multibyte
  - EncodingError < StandardErrorActiveSupport::Multibyte
  - UnicodeActiveSupport::Multibyte
    Codepoint < ObjectActiveSupport::Multibyte::Unicode
    UnicodeDatabase < ObjectActiveSupport::Multibyte::Unicode
Array < ObjectTop Level Namespace
BioinformTop Level Namespace
- CLIBioinform
  - ConvertMotif < ObjectBioinform::CLI
  - HelpersBioinform::CLI
  - MergeIntoCollectionBioinform::CLI
  - PCM2PWMBioinform::CLI
  - SplitMotifsBioinform::CLI
- Collection < ObjectBioinform
- ConversionAlgorithmsBioinform
  - PCM2PPMConverterBioinform::ConversionAlgorithms
  - PCM2PWMConverterBioinform::ConversionAlgorithms
- Error < StandardErrorBioinform
- InvalidMatrix < ErrorBioinform
- JasparParser < StringParserBioinform
- Motif < ObjectBioinform
- PCM < PMBioinform
- PM < ObjectBioinform
- PPM < PMBioinform
- PWM < PMBioinform
- ParametersBioinform
  - ClassMethodsBioinform::Parameters
- Parser < ObjectBioinform
  - MultipleMotifsParserBioinform::Parser
    ClassMethodsBioinform::Parser::MultipleMotifsParser
  - SingleMotifParserBioinform::Parser
    ClassMethodsBioinform::Parser::SingleMotifParser
- ParsingError < ErrorBioinform
- StringFantomParser < StringParserBioinform
- StringParser < ParserBioinform
- TrivialCollectionParser < ParserBioinform
- TrivialParser < ParserBioinform
- YAMLCollectionParser < ParserBioinform
- YAMLParser < ParserBioinform
EnumerableTop Level Namespace
Hash < ObjectTop Level Namespace
MathTop Level Namespace
Module < ObjectTop Level Namespace
NilClass < ObjectTop Level Namespace
Object < BasicObjectTop Level Namespace
RawFormatter < ObjectTop Level Namespace
String < ObjectTop Level Namespace
StringScanner < ObjectTop Level Namespace
TransfacFormatter < ObjectTop Level Namespace