Module: Bioinform

Defined in:: lib/bioinform.rb,
lib/bioinform/cli.rb,
lib/bioinform/version.rb,
lib/bioinform/cli/pcm2pwm.rb,
lib/bioinform/data_models/pm.rb,
lib/bioinform/parsers/parser.rb,
lib/bioinform/data_models/pcm.rb,
lib/bioinform/data_models/ppm.rb,
lib/bioinform/data_models/pwm.rb,
lib/bioinform/cli/split_motifs.rb,
lib/bioinform/cli/convert_motif.rb,
lib/bioinform/data_models/motif.rb,
lib/bioinform/support/parameters.rb,
lib/bioinform/parsers/yaml_parser.rb,
lib/bioinform/parsers/jaspar_parser.rb,
lib/bioinform/parsers/string_parser.rb,
lib/bioinform/data_models/collection.rb,
lib/bioinform/parsers/trivial_parser.rb,
lib/bioinform/cli/merge_into_collection.rb,
lib/bioinform/parsers/splittable_parser.rb,
lib/bioinform/parsers/string_fantom_parser.rb,
lib/bioinform/conversion_algorithms/pcm2ppm_converter.rb,
lib/bioinform/conversion_algorithms/pcm2pwm_converter.rb

Defined Under Namespace

Modules: CLI, ConversionAlgorithms, Parameters Classes: Collection, Error, InvalidMatrix, JasparParser, Motif, PCM, PM, PPM, PWM, Parser, ParsingError, StringFantomParser, StringParser, TrivialCollectionParser, TrivialParser, YAMLCollectionParser, YAMLParser

VERSION =

"0.1.12"

IndexByLetter =

{ 'A' => 0, 'C' => 1, 'G' => 2, 'T' => 3, A: 0, C: 1, G: 2, T: 3,
'a' => 0, 'c' => 1, 'g' => 2, 't' => 3, a: 0, c: 1, g: 2, t: 3}

LetterByIndex =

{0 => :A, 1 => :C, 2 => :G, 3 => :T}