Class: NumRu::Grid

Inherits:
Object
  • Object
show all
Defined in:
lib/numru/gphys/grid.rb,
lib/numru/gphys/gphys_dim_op.rb

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(*axes) ⇒ Grid

Returns a new instance of Grid.



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# File 'lib/numru/gphys/grid.rb', line 225

def initialize( *axes )
	 @axes = Array.new
	 axes.each{|ag|
      ### commented out for the duck typing:
      #if ag.is_a?(Axis)
      @axes.push(ag)
      #else
      #   raise ArgumentError, "each argument must be an Axis"
	    #end
	 }
	 @lost_axes = Array.new   # Array of String
	 @rank = @axes.length
	 @axnames = Array.new
	 __check_and_set_axnames
   @assoc_coords = nil
end

Instance Attribute Details

#rank ⇒ Object (readonly)

Returns the value of attribute rank.



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# File 'lib/numru/gphys/grid.rb', line 280

def rank
  @rank
end

Instance Method Details

#[](*slicer) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 501

def [] (*slicer)
	 if slicer.length == 0
	    # make a clone
	    axes = Array.new
	    (0...rank).each{ |i| axes.push( @axes[i][0..-1] ) }
	    grid = self.class.new( *axes )
	 else
	    slicer = __rubber_expansion(slicer)
	    if slicer.length != rank
  raise ArgumentError,"# of the args does not agree with the rank"
	    end
	    axes = Array.new
	    lost = self.lost_axes  #Array.new
	    for i in 0...rank
  ax = @axes[i][slicer[i]]
  if ax.is_a?(String)
           lost.push( ax )
         else
           axes.push( ax )
  end
	    end
	    grid = self.class.new( *axes )
	    grid.set_lost_axes( lost ) if lost.length != 0
	 end
   if @assoc_coords
     grid.assoc_coords = @assoc_coords[*slicer]
   end
   grid
end

#add_lost_axes(lost) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 368

def add_lost_axes( lost )
	 @lost_axes = @lost_axes + lost   # Array of String
   self
end

#assoc_coord_gphys(name) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 338

def assoc_coord_gphys(name)
  @assoc_coords && @assoc_coords.coord_gphys(name)
end

#assoc_coords ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 260

def assoc_coords
  @assoc_coords
end

#assoc_coords=(assoc_coords) ⇒ Object

  • assoc_coords : an AssocCoords



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# File 'lib/numru/gphys/grid.rb', line 256

def assoc_coords=(assoc_coords)
  @assoc_coords = assoc_coords 
end

#assoccoordnames ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 316

def assoccoordnames
	@assoc_coords && @assoc_coords.coordnames
end

#axis(dim_or_dimname) ⇒ Object Also known as: get_axis

def axis(i)

@axes[i]
    end



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# File 'lib/numru/gphys/grid.rb', line 324

def axis(dim_or_dimname)
	 ax_dim(dim_or_dimname)[0]
end

#axnames ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 282

def axnames
	@axnames.dup
end

#binning(dim, len) ⇒ Object 



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# File 'lib/numru/gphys/gphys_dim_op.rb', line 269

def binning(dim, len)
  dim = dim_index(dim)  # to handle String or negative specification

  #< axes >
  axes = (0...rank).collect{|d| axis(d)}
  axes[dim] = axes[dim].binning(len)  # bin the dim-th axis
  newgrid = Grid.new(*axes)

  #< assoc coords are retained if it does not have the dim >
  if assoc_coords
    dimname = self.axis(dim).name
    acs = Array.new
    assoccoordnames.each do |nm|
      ac = assoc_coord_gphys(nm)
      acs.push(ac) if !ac.axnames.include?(dimname)
    end
    newgrid.set_assoc_coords(acs) if acs.length > 0
  end

  #< return >
  newgrid
end

#change_axis(dim, axis) ⇒ Object

def exclude(dim_or_dimname)

dim = dim_index(dim_or_dimname)
axes = @axes.dup
axes.delete_at(dim)
self.class.new( *axes )
    end



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# File 'lib/numru/gphys/grid.rb', line 606

def change_axis(dim, axis)
	 axes = @axes.dup
	 lost = @lost_axes.dup
	 if axis.is_a?(Axis)
	    axes[dim] = axis
	 else
	    lost.push(axis) if axis.is_a?(String)
	    axes.delete_at(dim)
	 end
	 grid = self.class.new( *axes ).add_lost_axes( lost )
   if @assoc_coords
     grid.assoc_coords=@assoc_coords.subset_having_axnames(grid.axnames)
   end
   grid
end

#coord(i) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 330

def coord(i)
  if @assoc_coords && i.is_a?(String) && @assoc_coords.has_coord?(i)
    @assoc_coords.coord(i)
  else
    axis(i).pos
  end
end

#coord_dim_indices(coordname) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 346

def coord_dim_indices(coordname)
  dim = @axnames.index(coordname)
  if dim
    [dim]
  elsif @assoc_coords && @assoc_coords.has_coord?(coordname)
    axnms = @assoc_coords.coord_gphys(coordname).axnames
    axnms.collect{|nm| @axnames.index(nm)}
  else
    nil
  end
end

#coordnames ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 289

def coordnames
  ret = axnames
  ret.concat(@assoc_coords.coordnames) if @assoc_coords
  ret
end

#copy ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 444

def copy
	 # deep clone onto memory
	 out = self.class.new( *@axes.collect{|ax| ax.copy} )
	 out.set_lost_axes( @lost_axes.dup )
   out.assoc_coords = @assoc_coords.copy if @assoc_coords
	 out
end

#cut(*args) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 553

def cut(*args)
	_cut_(false, *args)
end

#cut_assoccoord(hasharg) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 547

def cut_assoccoord(hasharg)
  ac, acsl = @assoc_coords.cut(hasharg)
  sl = @axnames.collect{|nm| acsl[nm] || true}
  [ self[*sl], sl ]
end

#cut_rank_conserving(*args) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 556

def cut_rank_conserving(*args)
	_cut_(true, *args)
end

#delete_axes(at, deleted_by = nil) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 373

def delete_axes( at, deleted_by=nil )
	case at
  when String
    at = [dim_index(at)]
	when Numeric
	  at = [at]
	when Array
    at = at.collect{|x|
      case x
      when String
        dim_index(x)
      when Integer
        x
      else
        raise ArgumentError,"'at' must consist of Integer and/or String"
      end
    }
	else
	  raise TypeError, "1st arg not an Array"
	end

	at.collect!{|pos| 
	  if pos < 0
	    pos + a.length
	  else
	    pos
	  end
	}
	at.sort!
	newaxes = @axes.dup
	at.reverse.each{|pos| 
	  del = newaxes.delete_at(pos)
	  if !del
	    raise ArgumentError, "dimension #{pos} does not exist in a #{rank}D Grid"
	  end
	}

	newgrid = self.class.new( *newaxes )
	newgrid.set_lost_axes( @lost_axes.dup )
  if @assoc_coords
    if deleted_by && VArray::NArray_type3_methods.include?(deleted_by)
      assoc_coords = Array.new
      assoccoordnames.each do |aname|
        g = assoc_coord_gphys(aname)
        args = g.axnames & at.collect{|i| @axnames[i]}
        g = g.mean(*args) unless args.empty?
        assoc_coords.push g if GPhys === g
      end
      newgrid.set_assoc_coords assoc_coords
    else
      newgrid.assoc_coords = @assoc_coords.subset_having_axnames(newgrid.axnames)
    end
  end

	if !deleted_by 
	  msg = '(deleted) '
	else
	  raise TypeError, "2nd arg not a String" if !deleted_by.is_a?(String)
	  msg = '('+deleted_by+') '
	end
	lost = at.collect{|pos|
	  mn = sprintf("%g", ( UNumeric===(a=@axes[pos].pos.min) ? a.val : a) )
	  mx = sprintf("%g", ( UNumeric===(a=@axes[pos].pos.max) ? a.val : a) )
	  msg + 
	  "#{@axes[pos].name}:#{mn}..#{mx}"
	}

	newgrid.add_lost_axes( lost )
	newgrid
end

#dim_index(dimname) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 342

def dim_index(dimname)
	 ax_dim(dimname)[1]
end

#has_assoccoord?(*arg) ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/numru/gphys/grid.rb', line 299

def has_assoccoord?(*arg)
  if arg.length == 0
    !@assoc_coords.nil?   # if a grid has assoc coords
  else
    name = arg[0]
    if @assoc_coords
      @assoc_coords.has_coord?(name)
    else
      false
    end
  end
end

#has_axis?(name) ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/numru/gphys/grid.rb', line 295

def has_axis?(name)
	@axnames.include?(name)
end

#has_coord?(name) ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/numru/gphys/grid.rb', line 312

def has_coord?(name)
  has_axis?(name) || has_assoccoord?(name)
end

#insert_axis(dim, axis) ⇒ Object

def insert_axis!(dim_or_dimname, axis)

dim = dim_index(dim_or_dimname)
if axis == nil
   # do nothing
else
   @axes[dim+1,0] = axis    # @axes.insert(dim, axis) if ruby 1.7
   @rank = @axes.length
   __check_and_set_axnames
end
self
    end



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# File 'lib/numru/gphys/grid.rb', line 646

def insert_axis(dim, axis)
  axes = @axes.dup
  ### commented out for the duck typing:
  #if axis.is_a?(Axis)
    axes.insert(dim, axis)
  #else
  #  raise ArgumentError, "2nd arg must be an Axis"
  #end
  grid = self.class.new( *axes )
	grid.set_lost_axes( lost_axes )
  grid.assoc_coords = @assoc_coords.dup if @assoc_coords
	grid
end

#inspect ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 264

def inspect
  "<#{rank}D grid #{@axes.collect{|ax| ax.inspect}.join("\n\t")}#{@assoc_coords ? "\n"+@assoc_coords.inspect.gsub(/^/,"\t") : ''}>"
end

#lost_axes ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 285

def lost_axes
	@lost_axes.dup
end

#merge(other) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 452

def merge(other)
	# merge two grids by basically using copies of self's axes but
	# using the other's if the length in self is 1 and 
  # the length in the other is longer
	if self.rank != other.rank
	  raise "ranks do not agree (self:#{self.rank} vs other:#{other.rank})"
	end
	axes = Array.new
	for i in 0...self.rank
	  if @axes[i].length == 1 and other.axis(i).length > 1
	    axes[i] = other.axis(i)
	  else
	    axes[i] = @axes[i]
	  end
	end
	out = self.class.new( *axes )
	out.set_lost_axes( (@lost_axes.dup + other.lost_axes).uniq )
  if (oac = other.assoc_coords) || (sac = self.assoc_coords)
    sac ? ac=sac.merge(oac) : ac=oac.merge(sac)
    out.assoc_coords = ac
  end
	out
end

#set_assoc_coords(assoc_crds) ⇒ Object

  • assoc_crds : an Array of GPhys



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# File 'lib/numru/gphys/grid.rb', line 244

def set_assoc_coords(assoc_crds)
  @assoc_coords = AssocCoords.new(assoc_crds, @axnames)
  @assoc_coords.axlens.each do |nm,l|
    if l && l != (l0 = shape[dim_index(nm)])
      raise ArgumentError, "Length mismatch in coord #{nm} (#{l0}) and assoc_crds (#{l}). You may need to regrid (use GPhys#regrid method) associated coordinate(s) in advance."
    end
  end
  self
end

#set_axis(dim_or_dimname, ax) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 358

def set_axis(dim_or_dimname,ax)
	 @axes[ i = dim_index(dim_or_dimname) ] = ax
   @axnames[ i ] = ax.name
	 self
end

#set_lost_axes(lost) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 364

def set_lost_axes( lost )
	 @lost_axes = lost   # Array of String
   self
end

#shape ⇒ Object Also known as: shape_current 



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# File 'lib/numru/gphys/grid.rb', line 476

def shape
	 @axes.collect{|ax| ax.length}
end

#transpose(*dims) ⇒ Object 



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# File 'lib/numru/gphys/grid.rb', line 660

def transpose( *dims )
	if dims.sort != NArray.int(rank).indgen!.to_a
	  raise ArgumentError, 
      "Args must a permutation of 0..rank-1 (eg, if 3D 2,1,0; 1,0,2;etc)"
	end
	axes = Array.new
	for i in 0...rank
	  axes[i] = @axes[dims[i]]
	end
	grid = self.class.new(*axes)
	grid.set_lost_axes( lost_axes )
  grid.assoc_coords = @assoc_coords.dup if @assoc_coords
	grid
end