Class: FHIR::MolecularSequence

Inherits:
Model
  • Object
show all
Includes:
Hashable, Json, Xml
Defined in:
lib/fhir_models/fhir/resources/MolecularSequence.rb

Defined Under Namespace

Classes: Quality, ReferenceSeq, Repository, StructureVariant, Variant

Constant Summary collapse

SEARCH_PARAMS = 
['chromosome', 'identifier', 'patient', 'referenceseqid', 'type', 'variant-end', 'variant-start', 'window-end', 'window-start']
METADATA = 
{
  'id' => {'type'=>'id', 'path'=>'MolecularSequence.id', 'min'=>0, 'max'=>1},
  'meta' => {'type'=>'Meta', 'path'=>'MolecularSequence.meta', 'min'=>0, 'max'=>1},
  'implicitRules' => {'type'=>'uri', 'path'=>'MolecularSequence.implicitRules', 'min'=>0, 'max'=>1},
  'language' => {'valid_codes'=>{'urn:ietf:bcp:47'=>['ar', 'bn', 'cs', 'da', 'de', 'de-AT', 'de-CH', 'de-DE', 'el', 'en', 'en-AU', 'en-CA', 'en-GB', 'en-IN', 'en-NZ', 'en-SG', 'en-US', 'es', 'es-AR', 'es-ES', 'es-UY', 'fi', 'fr', 'fr-BE', 'fr-CH', 'fr-FR', 'fy', 'fy-NL', 'hi', 'hr', 'it', 'it-CH', 'it-IT', 'ja', 'ko', 'nl', 'nl-BE', 'nl-NL', 'no', 'no-NO', 'pa', 'pl', 'pt', 'pt-BR', 'ru', 'ru-RU', 'sr', 'sr-RS', 'sv', 'sv-SE', 'te', 'zh', 'zh-CN', 'zh-HK', 'zh-SG', 'zh-TW']}, 'type'=>'code', 'path'=>'MolecularSequence.language', 'min'=>0, 'max'=>1, 'binding'=>{'strength'=>'preferred', 'uri'=>'http://hl7.org/fhir/ValueSet/languages'}},
  'text' => {'type'=>'Narrative', 'path'=>'MolecularSequence.text', 'min'=>0, 'max'=>1},
  'contained' => {'type'=>'Resource', 'path'=>'MolecularSequence.contained', 'min'=>0, 'max'=>Float::INFINITY},
  'extension' => {'type'=>'Extension', 'path'=>'MolecularSequence.extension', 'min'=>0, 'max'=>Float::INFINITY},
  'modifierExtension' => {'type'=>'Extension', 'path'=>'MolecularSequence.modifierExtension', 'min'=>0, 'max'=>Float::INFINITY},
  'identifier' => {'type'=>'Identifier', 'path'=>'MolecularSequence.identifier', 'min'=>0, 'max'=>Float::INFINITY},
  'type' => {'valid_codes'=>{'http://hl7.org/fhir/sequence-type'=>['aa', 'dna', 'rna']}, 'type'=>'code', 'path'=>'MolecularSequence.type', 'min'=>0, 'max'=>1, 'binding'=>{'strength'=>'required', 'uri'=>'http://hl7.org/fhir/ValueSet/sequence-type|4.0.0'}},
  'coordinateSystem' => {'type'=>'integer', 'path'=>'MolecularSequence.coordinateSystem', 'min'=>1, 'max'=>1},
  'patient' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Patient'], 'type'=>'Reference', 'path'=>'MolecularSequence.patient', 'min'=>0, 'max'=>1},
  'specimen' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Specimen'], 'type'=>'Reference', 'path'=>'MolecularSequence.specimen', 'min'=>0, 'max'=>1},
  'device' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Device'], 'type'=>'Reference', 'path'=>'MolecularSequence.device', 'min'=>0, 'max'=>1},
  'performer' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Organization'], 'type'=>'Reference', 'path'=>'MolecularSequence.performer', 'min'=>0, 'max'=>1},
  'quantity' => {'type'=>'Quantity', 'path'=>'MolecularSequence.quantity', 'min'=>0, 'max'=>1},
  'referenceSeq' => {'type'=>'MolecularSequence::ReferenceSeq', 'path'=>'MolecularSequence.referenceSeq', 'min'=>0, 'max'=>1},
  'variant' => {'type'=>'MolecularSequence::Variant', 'path'=>'MolecularSequence.variant', 'min'=>0, 'max'=>Float::INFINITY},
  'observedSeq' => {'type'=>'string', 'path'=>'MolecularSequence.observedSeq', 'min'=>0, 'max'=>1},
  'quality' => {'type'=>'MolecularSequence::Quality', 'path'=>'MolecularSequence.quality', 'min'=>0, 'max'=>Float::INFINITY},
  'readCoverage' => {'type'=>'integer', 'path'=>'MolecularSequence.readCoverage', 'min'=>0, 'max'=>1},
  'repository' => {'type'=>'MolecularSequence::Repository', 'path'=>'MolecularSequence.repository', 'min'=>0, 'max'=>Float::INFINITY},
  'pointer' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/MolecularSequence'], 'type'=>'Reference', 'path'=>'MolecularSequence.pointer', 'min'=>0, 'max'=>Float::INFINITY},
  'structureVariant' => {'type'=>'MolecularSequence::StructureVariant', 'path'=>'MolecularSequence.structureVariant', 'min'=>0, 'max'=>Float::INFINITY}
}

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from Xml

from_xml, #to_xml, valid?, validate

Methods included from Deprecate

#deprecate

Methods included from Json

from_json, #to_json

Methods included from Hashable

#from_hash, #to_hash

Methods inherited from Model

#==, #attribute_mismatch, #compare_attribute, #equals?, #hash, #initialize, #method_missing, #mismatch, #primitive?, #to_reference, #valid?, #validate, #validate_profile

Constructor Details

This class inherits a constructor from FHIR::Model

Dynamic Method Handling

This class handles dynamic methods through the method_missing method in the class FHIR::Model

Instance Attribute Details

#contained ⇒ Object

0-* [ Resource ]



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 272

def contained
  @contained
end

#coordinateSystem ⇒ Object

1-1 integer



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 277

def coordinateSystem
  @coordinateSystem
end

#device ⇒ Object

0-1 Reference(Device)



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 280

def device
  @device
end

#extension ⇒ Object

0-* [ Extension ]



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 273

def extension
  @extension
end

#id ⇒ Object

0-1 id



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 267

def id
  @id
end

#identifier ⇒ Object

0-* [ Identifier ]



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 275

def identifier
  @identifier
end

#implicitRules ⇒ Object

0-1 uri



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 269

def implicitRules
  @implicitRules
end

#language ⇒ Object

0-1 code



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 270

def language
  @language
end

#meta ⇒ Object

0-1 Meta



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 268

def meta
  @meta
end

#modifierExtension ⇒ Object

0-* [ Extension ]



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 274

def modifierExtension
  @modifierExtension
end

#observedSeq ⇒ Object

0-1 string



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 285

def observedSeq
  @observedSeq
end

#patient ⇒ Object

0-1 Reference(Patient)



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 278

def patient
  @patient
end

#performer ⇒ Object

0-1 Reference(Organization)



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 281

def performer
  @performer
end

#pointer ⇒ Object

0-* [ Reference(MolecularSequence) ]



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 289

def pointer
  @pointer
end

#quality ⇒ Object

0-* [ MolecularSequence::Quality ]



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 286

def quality
  @quality
end

#quantity ⇒ Object

0-1 Quantity



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 282

def quantity
  @quantity
end

#readCoverage ⇒ Object

0-1 integer



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 287

def readCoverage
  @readCoverage
end

#referenceSeq ⇒ Object

0-1 MolecularSequence::ReferenceSeq



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 283

def referenceSeq
  @referenceSeq
end

#repository ⇒ Object

0-* [ MolecularSequence::Repository ]



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 288

def repository
  @repository
end

#specimen ⇒ Object

0-1 Reference(Specimen)



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 279

def specimen
  @specimen
end

#structureVariant ⇒ Object

0-* [ MolecularSequence::StructureVariant ]



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 290

def structureVariant
  @structureVariant
end

#text ⇒ Object

0-1 Narrative



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 271

def text
  @text
end

#type ⇒ Object

0-1 code



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 276

def type
  @type
end

#variant ⇒ Object

0-* [ MolecularSequence::Variant ]



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 284

def variant
  @variant
end

Instance Method Details

#resourceType ⇒ Object 



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# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 292

def resourceType
  'MolecularSequence'
end