Documentation for chemruby (0.9.3)

Alphabetic Index

File Listing

README

Namespace Listing A-Z

Top Level Namespace

A

ANumber (Chem::KEGG)
Atom (Chem::KEGG)
Atom (Chem)
AtomicOrbital (Chem::G98)

B

Bond (Chem::KEGG)
Bond (Chem)

C

CDX (Chem)
CDX (Chem::CDX)
CDXBoolean (Chem::CDX)
CDXBooleanImplied (Chem::CDX)
CDXColorTable (Chem::CDX)
CDXCoordinate (Chem::CDX)
CDXCurvePoints (Chem::CDX)
CDXCurvePoints3D (Chem::CDX)
CDXDate (Chem::CDX)
CDXElementList (Chem::CDX)
CDXFontStyle (Chem::CDX)
CDXFontTable (Chem::CDX)
CDXFormula (Chem::CDX)
CDXLineStarts (Chem::CDX)
CDXObject (Chem::CDX)
CDXObjectID (Chem::CDX)
CDXObjectIDArray (Chem::CDX)
CDXObjectIDArrayWithCounts (Chem::CDX)
CDXPoint2D (Chem::CDX)
CDXPoint3D (Chem::CDX)
CDXRectangle (Chem::CDX)
CDXRepresentsProperty (Chem::CDX)
CDXString (Chem::CDX)
CDXStyle (Chem::CDX)
CdxType (Chem::Type)
Chem

D

Db (Chem)

E

EpsParameter (Chem::Molecule)

F

Float64 (Chem::CDX)
Font_class (Chem::CDX)

G

G98 (Chem)
G98Atom (Chem::G98)
GSpan (Chem)
GSpanAtom (Chem)
GSpanBond (Chem)
GSpanMolecule (Chem)
GSpanType (Chem::Type)
GaussianResult (Chem::G98)
Graph

I

INT16ListWithCounts (Chem::CDX)
Int16 (Chem::CDX)
Int32 (Chem::CDX)
Int8 (Chem::CDX)
IupacParser

K

KCF (Chem::KEGG)
KCFAtom (Chem::KEGG)
KCFBond (Chem::KEGG)
KCFCorrespondence (Chem::KEGG)
KCFGlycan (Chem::KEGG)
KCFGlycanType (Chem::Type)
KCFMolecule (Chem::KEGG)
KCFRXN (Chem::KEGG)
KCFReader (Chem::KEGG)
KCFType (Chem::Type)
KEGG (Chem)
KEGGReaction (Chem::KEGG)
KeggCompound (Chem::KEGG)
KeggDirectory (Chem::KEGG)
KeggEc (Chem::KEGG)
KeggFormat (Chem::KEGG)
KeggGene (Chem::KEGG::KeggDirectory)
KeggGlycan (Chem::KEGG)
KeggGlycanParser (Chem::KEGG)
KeggGlycanType (Chem::Type)
KeggOrganism (Chem::KEGG::KeggDirectory)
KeggPfam (Chem::KEGG::KeggDirectory)
KeggReaction (Chem::KEGG)
KeggReactionLstParser (Chem::KEGG)
KeggReactionLstType (Chem::Type)
KeggReactionMapParser (Chem::KEGG)
KeggReactionMapType (Chem::Type)
KeggReactionParser (Chem::KEGG)
KeggReactionType (Chem::Type)

L

Lines (Chem::G98)
Link (Chem::G98)
LinucsParser

M

MDL (Chem)
MDLAtom (Chem::MDL)
MDLBond (Chem::MDL)
MSI (Chem)
MSIAtom (Chem::MSI)
MSIBond (Chem::MSI)
MSIFile (Chem::MSI)
MSIObject (Chem::MSI)
MSIReader (Chem::MSI)
MdlMolParser (Chem::MDL)
MdlMolType (Chem::Type)
MdlMolecule (Chem::MDL)
MdlReaction (Chem::MDL)
MdlRxnType (Chem::Type)
Model (Chem::MSI)
Model (Chem::SMBL)
MolecularOrbital (Chem::G98)
Molecule (Chem)
Mopac7 (Chem)
MopacReader (Chem::Mopac7)

P

PDFType (Chem::Type)
PDFWriter (Chem)
PNGType (Chem::Type)
PdbDic (Chem)
PdbDicAtom (Chem::PdbDic)
PdbDicBond (Chem::PdbDic)
PdbDicMolecule (Chem::PdbDic)
PubChem (Chem::PubChem)
PubChem (Chem)
PubChemEntry (Chem::PubChem)

R

RMagickWriter (Chem)
RXNEdge (Chem::KEGG::KCFRXN)
RXNNode (Chem::KEGG::KCFRXN)
Reaction (Chem)
ReactionEntry (Chem::KEGG::KeggReaction)
ReactionSkeleton (Chem)
Ring (Chem)
RxnAtom (Chem::MDL)
RxnBond (Chem::MDL)

S

SMBL (Chem)
SMBLReaction (Chem::SMBL)
SWFWriter (Chem)
SdfParser (Chem::MDL)
SdfType (Chem::Type)
SkeletonAtom (Chem)
SmilesAtom (Chem)
SmilesBond (Chem)
SmilesMol (Chem)
SmilesParser
Specie (Chem::SMBL)
SubGraphDB (Graph)
Sybyl (Chem)
SybylAtom (Chem::Sybyl)
SybylBond (Chem::Sybyl)
SybylMolecule (Chem::Sybyl)
SybylType (Chem::Type)

T

TINKER (Chem)
ThreeDimension (Chem::Transform)
TinkerAtom (Chem::TINKER)
TinkerBond (Chem::TINKER)
TinkerMol (Chem::TINKER)
TinkerNucleic (Chem)
TinkerReader (Chem::TINKER)
Transform
Transform (Chem)
TwoDimension (Chem::Transform)
Type (Chem)

U

Uint16 (Chem::CDX)
Uint32 (Chem::CDX)
Uint8 (Chem::CDX)
Unformatted (Chem::CDX)

V

Vector

W

Writer (Chem)

X

XYZ (Chem)
XyzAtom (Chem::XYZ)
XyzMolecule (Chem::XYZ)
XyzType (Chem::Type)