Class: Chem::KEGG::KeggDirectory::KeggOrganism

Inherits:

Object

• Object
• Chem::KEGG::KeggDirectory::KeggOrganism

Defined in:

lib/chem/db/kegg.rb

Instance Method Summary

• #[](key) ⇒ Object
• #initialize(organism, kegg) ⇒ KeggOrganism constructor

  A new instance of KeggOrganism.

• #pfam ⇒ Object

Constructor Details

#initialize(organism, kegg) ⇒ KeggOrganism

Returns a new instance of KeggOrganism.

# File 'lib/chem/db/kegg.rb', line 95

def initialize organism, kegg
  @organism = organism
  @kegg = kegg
end

Instance Method Details

#[](key) ⇒ Object

# File 'lib/chem/db/kegg.rb', line 105

def [](key)
  @kegg
end

#pfam ⇒ Object

# File 'lib/chem/db/kegg.rb', line 100

def pfam
  pfam2gene = @kegg.gene_to_pfam(@organism)
  pfam2gene
end