Class: Bioroebe::GUI::UniversalWidgets::HammingDistance

Inherits:
UniversalWidgets::Base
  • Object
show all
Includes:
CommandlineArguments, Bioroebe::GUI
Defined in:
lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb

Overview

Bioroebe::GUI::UniversalWidgets::HammingDistance

Constant Summary collapse

TITLE =
#

TITLE

Specify which title to use for this small widget.

#
'Hamming Distance'
USE_THIS_TITLE =

USE_THIS_TITLE

TITLE
WIDTH =
#

WIDTH

#
'65% or 500px minimum'
HEIGHT =
#

HEIGHT

#
'55% or 300px minimum'
TEXT_COMPARE_THE_TWO_SEQUENCES =
#

TEXT_COMPARE_THE_TWO_SEQUENCES

#
'_Compare the two sequences'
MONOSPACED_FONT =
#

MONOSPACED_FONT

When this font is changed, don’t forget to also change the font at SMALLER_FONT.

#
:hack_20
USE_THIS_FONT = 
MONOSPACED_FONT
SMALLER_FONT =
#

SMALLER_FONT

#
:hack_16
USE_THIS_SLIGHTLY_SMALLER_FONT =
#

USE_THIS_SLIGHTLY_SMALLER_FONT

#
:hack_16
USE_THIS_TITLE_FOR_THE_MAIN_BUTTON =
#

USE_THIS_TITLE_FOR_THE_MAIN_BUTTON

#
'_Determine the DNA sequence'
PADDING_TO_USE =
#

PADDING_TO_USE

#
12
DEFAULT_TEXT_FOR_ENTRY1 =
#

DEFAULT_TEXT_FOR_ENTRY1

#
'AGUUCGAUGGAAAATAT'
DEFAULT_TEXT_FOR_ENTRY2 =
#

DEFAULT_TEXT_FOR_ENTRY2

#
'AGUCCGGUCGAAAAAAA'

Constants included from Bioroebe::GUI

ARRAY_ALL_GTK_WIDGETS, FONT_SIZE, OLD_VERBOSE_VALUE, Bioroebe::GUI::USE_THIS_FONT_FAMILY_FOR_GUI_APPLICATIONS

Constants included from ColoursForBase

ColoursForBase::ARRAY_HTML_COLOURS_IN_USE

Class Method Summary collapse

Instance Method Summary collapse

Methods included from Bioroebe::GUI

#disable_warnings, #enable_warnings, #log_dir?

Methods included from CommandlineArguments

#commandline_arguments?, #commandline_arguments_that_are_files?, #e, #first?, #first_non_hyphen_argument?, #remove_hyphens_from_the_commandline_arguments, #return_commandline_arguments_as_string, #return_commandline_arguments_that_are_not_files, #return_entries_without_two_leading_hyphens, #select_commandline_arguments, #select_entries_starting_with_two_hyphens, #set_commandline_arguments

Methods included from ColoursForBase

#colourize_this_aminoacid_sequence_for_the_commandline, #colourize_this_nucleotide_sequence, #disable_colours, #ecomment, #efancy, #egold, #enable_colours, #eorange, #eparse, #erev, #red, #remove_trailing_escape_part, #return_colour_for_nucleotides, #rev, #sdir, #set_will_we_use_colours, #sfancy, #sfile, #simp, #swarn, #use_colours?, #use_colours_within_the_bioroebe_namespace?

Constructor Details

#initialize(commandline_arguments = nil, run_already = true) ⇒ HammingDistance

#

initialize

#


100
101
102
103
104
105
106
107
108
109
110
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 100

def initialize(
    commandline_arguments = nil,
    run_already           = true
  )
  determine_the_GUI_to_be_used(commandline_arguments)
  reset
  set_commandline_arguments(
    commandline_arguments
  )
  run if run_already
end

Class Method Details

.[](i = ARGV) ⇒ Object

#

Bioroebe::GUI::UniversalWidgets::HammingDistance[]

#


624
625
626
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 624

def self.[](i = ARGV)
  new(i)
end

.run(i = ARGV) ⇒ Object

#

Bioroebe::GUI::Gtk::HammingDistance.run

#


631
632
633
634
635
636
637
638
639
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 631

def self.run(
    i = ARGV
  )
  r = ::Gtk.runner_factory(
    ::Bioroebe::GUI::Gtk::HammingDistance.new(i)
  )
  r.modify_background(:normal, :mintcream)
  return r
end

Instance Method Details

#aminoacid_sequence? ⇒ Boolean

#

aminoacid_sequence?

#

Returns:

  • (Boolean) 


411
412
413
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 411

def aminoacid_sequence?
  left_buffer?.to_s
end

#border_size? ⇒ Boolean

#

border_size?

#

Returns:

  • (Boolean) 


154
155
156
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 154

def border_size?
  8
end

#compare_the_two_sequences ⇒ Object Also known as: do_compare, do_calculate_the_differences

#

compare_the_two_sequences

This is the method that will compare the two sequences.

#


535
536
537
538
539
540
541
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 535

def compare_the_two_sequences
  do_upcase_all_entries
  hamming_distance_object = ::Bioroebe::HammingDistance.new("#{seq1?} #{seq2?}") { :be_quiet }
  @entry_n_differences.set_text(
    hamming_distance_object.n_differences?.to_s
  )
end

#connect_the_skeleton ⇒ Object

#

connect_the_skeleton (connect tag, skeleton tag)

#


571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 571

def connect_the_skeleton
  abort_on_exception
  
  # ======================================================================= #
  # @top_box is an instance of gtk-vbox.
  # ======================================================================= #
  @top_box.minimal(@label_on_top,     1)
  text = left_aligned_text(
      "The <b>Hamming distance</b> - a number - measures the number of "\
      "\npositions at which two strings of equal length are "\
      "different.")
  text.make_selectable
  text.use_this_font = SMALLER_FONT
  @top_box.minimal(text,              12)
  @top_box.minimal(@hbox_for_string1,  2)
  @top_box.minimal(@hbox_for_string2,  2)

  vpaned = mouse_draggable_via_up_and_down_movement(@top_box, @bottom_box)
  vpaned.set_size_request(width?, 550)

  Thread.new {
    sleep 0.01
    @entry_n_differences.do_focus
    entry1?.deselect
    do_compare
  }

  window = runner_widget(nil, width?, height?, title?)
  window << vpaned
  ::UniversalWidgets.set_main_window(window)
  upon_delete_event_quit_the_application
  jump_into_the_first_entry
  window.use_this_font = font?
  window.show_all
  window.set_size_request(width?, height?)
  window.set_default_size(width?, height?)
  window.set_padding(padding?)
  window.set_border_size(border_size?)
  window.set_size_request(80, 100)
  window.top_left
  run_main
end

#consider_sanitizing_the_input ⇒ Object

#

consider_sanitizing_the_input

#


559
560
561
562
563
564
565
566
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 559

def consider_sanitizing_the_input
  # ======================================================================= #
  # The following two lines were added as of 07.05.2020.
  # ======================================================================= #
  @entry_on_top.set_text(@entry_on_top.text.delete('-'))
  @entry_on_bottom.set_text(@entry_on_bottom.text.delete('-'))
  do_upcase_all_entries
end

#consider_sanitizing_the_input_and_then_compare_the_two_sequences ⇒ Object

#

consider_sanitizing_the_input_and_then_compare_the_two_sequences

#


463
464
465
466
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 463

def consider_sanitizing_the_input_and_then_compare_the_two_sequences
  consider_sanitizing_the_input
  compare_the_two_sequences
end

#create_buttons ⇒ Object

#

create_buttons (buttons tag)

#


353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 353

def create_buttons
  backtrack_button = bold_button(
    USE_THIS_TITLE_FOR_THE_MAIN_BUTTON, self, :use_mnemonic
  ) {
    :do_determine_the_backtrack_sequence
  }
  backtrack_button.set_name('button1')
  backtrack_button.do_use_underline
  backtrack_button.hint = 
    "On the <b>left hand side</b>, you should input the "\
    "Aminoacid sequence.\n\n"\
    "On the <b>right hand side</b>, a possible DNA "\
    "sequence for this Aminoacid Sequence will "\
    "be displayed.\n\n"\
    "Invalid amino acids, such as 'U', will be filtered "\
    "out, if given.\n\n"\
    "Note that this will not necessarily "\
    "generate the same sequence, due to several different codons "\
    "encoding for the same aminoacid."
  backtrack_button.on_hover_lightblue
  @dataset[:backtrack_button] = backtrack_button
  a_quit_button = quit_button
  a_quit_button.set_name('button1')
  a_quit_button.make_bold
  @dataset[:quit_button] = a_quit_button
end

#create_compare_button ⇒ Object

#

create_compare_button

This method will create the button that will compare the two sequences.

#


445
446
447
448
449
450
451
452
453
454
455
456
457
458
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 445

def create_compare_button
  # ======================================================================= #
  # === @compare_button
  # ======================================================================= #
  @compare_button = bold_button(TEXT_COMPARE_THE_TWO_SEQUENCES, self, :use_mnemonics) {
    :consider_sanitizing_the_input_and_then_compare_the_two_sequences
  }
  @compare_button.apply_markup
  @compare_button.on_hover(:lightblue)
  @compare_button.set_name('button1')
  @compare_button.hint = 'Click this button to '\
    '<span weight="bold" foreground="lightblue">compare</span> '\
    'the two sequences.'
end

#create_left_buffer ⇒ Object

#

create_left_buffer

#


294
295
296
297
298
299
300
301
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 294

def create_left_buffer
  # ======================================================================= #
  # === :left_buffer
  # ======================================================================= #
  @dataset[:left_buffer] = create_text_view # The left text view.
  @dataset[:left_buffer].bblack1
  @dataset[:left_buffer].do_wrap_properly
end

#create_middle_bar_containing_the_arrow_pointing_to_the_right_side ⇒ Object

#

create_middle_bar_containing_the_arrow_pointing_to_the_right_side

#


245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 245

def create_middle_bar_containing_the_arrow_pointing_to_the_right_side
  @middle_bar = create_vbox
  event_box = create_eventbox(
    create_label(:arrow_right)
  )
  event_box.hint =
    'This arrow can be clicked, to convert from the aminoacid sequence '\
    'to (one likely) possible DNA sequence.'
  event_box.on_clicked {
    do_determine_the_backtrack_sequence
  }
  @middle_bar.minimal(
    event_box
  )
end

#create_right_buffer ⇒ Object

#

create_right_buffer

#


135
136
137
138
139
140
141
142
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 135

def create_right_buffer
  # ======================================================================= #
  # === :right_buffer
  # ======================================================================= #
  @dataset[:right_buffer] = create_text_view # The right text view.
  @dataset[:right_buffer].bblack1
  @dataset[:right_buffer].do_wrap_properly
end

#create_the_entries ⇒ Object

#

create_the_entries (entries tag, entry tag)

#


182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 182

def create_the_entries
  # ======================================================================= #
  # === @entry_n_differences
  #
  # This is the entry that will simply show the number of differences
  # between the two sequences, as a number.
  # ======================================================================= #
  @entry_n_differences = entry_with_icon_name('edit-undo-symbolic-rtl.symbolic')
  @entry_n_differences.xalign = 0.5 # Align towards the center.
  @entry_n_differences.bblack1
  @entry_n_differences.clear_background
  @entry_n_differences.yellow_background

  # ======================================================================= #
  # === @entry_on_top
  # ======================================================================= #
  @entry_on_top = create_entry(DEFAULT_TEXT_FOR_ENTRY1)
  @entry_on_top.set_font(MONOSPACED_FONT)
  @entry_on_top.clear_background
  @entry_on_top.css_class('BG_lightsteelblue')
  @entry_on_top.bblack1
  @entry_on_top.on_changed { do_calculate_the_differences }
  @entry_on_top.hint = 'This entry should contain the first sequence (seq1).'
  @entry_on_top.set_max_length(50_000)
  @entry_on_top.on_key_press_event { |widget, event|
    old_text = widget.text
    keyname = Gdk::Keyval.to_name(event.keyval)
    case keyname.upcase
    when *%w( A T C G U )
      # This is ok.
    when *%w( B D E F H I J K L M N O P Q R S V W X Y Z ) # Otherwise set the old input here.
      unless event.state.control_mask? # This snippet checks whether a key-combination has been used.
        widget.set_text(old_text.upcase)
      end
    end
  } if false # disabled as of August 2022.
  # ======================================================================= #
  # And keep things upcased here:
  # ======================================================================= #
  @entry_on_top.on_key_release { |widget, event|
    old_text = @entry_on_top.text
    new_text = @entry_on_top.text.upcase
    unless old_text == new_text
      @entry_on_top.set_text(new_text)
      @entry_on_top.move_cursor_to_the_most_right_position
    end
  }

  # ======================================================================= #
  # === @entry_on_bottom
  # ======================================================================= #
  @entry_on_bottom = create_entry(DEFAULT_TEXT_FOR_ENTRY2)
  @entry_on_bottom.set_font(MONOSPACED_FONT)
  @entry_on_bottom.css_classes('clear_background BG_lightsteelblue')
  @entry_on_bottom.bblack1
  @entry_on_bottom.on_changed { do_calculate_the_differences }
  @entry_on_bottom.hint = 'This entry should contain the second sequence (seq2).'
  @entry_on_bottom.set_max_length(50_000)
end

#create_the_skeleton ⇒ Object

#

create_the_skeleton (create tag, skeleton tag)

#


471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 471

def create_the_skeleton
  create_the_entries
  # ======================================================================= #
  # === The top box
  # ======================================================================= #
  @top_box = vbox

  @label_on_top = bold_label(USE_THIS_TITLE)
  @label_on_top.hint = 
    "Only <b>valid nucleotides</b> (A, T, C, G, U) \n"\
    "can be accepted as input."
  # ======================================================================= #
  # Create the top hbox for string1 next:
  # ======================================================================= #
  @hbox_for_string1 = create_hbox
  @hbox_for_string1.minimal(text('1').make_bold, 1)
  @hbox_for_string1.maximal(@entry_on_top, 1)

  # ======================================================================= #
  # Create the bottom hbox for string2 next:
  # ======================================================================= #
  @hbox_for_string2 = create_hbox
  @hbox_for_string2.minimal(text('2').make_bold, 1)
  @hbox_for_string2.maximal(@entry_on_bottom, 1)

  create_compare_button

  small_hbox = create_hbox
  # ======================================================================= #
  # === n_differences found Gtk::Text
  # ======================================================================= #
  short_text_widget = text('<b>n differences</b> found:')
  short_text_widget.do_markify
  small_hbox.minimal(short_text_widget, 2)
  small_hbox.hint =
    'This entry will show <b>how many differences</b> '\
    'exist between these two strings.'
  small_hbox.minimal(@entry_n_differences, 2)
  # ======================================================================= #
  # === The bottom box
  # ======================================================================= #
  @bottom_box = create_vbox
  @bottom_box.pack_start(@compare_button, expand: false, fill: false, padding: 1)
  @bottom_box.pack_start(small_hbox, expand: false, fill: true, padding: 0)
end

#create_top_hbox ⇒ Object

#

create_top_hbox

#


264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 264

def create_top_hbox
  # ======================================================================= #
  # The paned-widget is close to the top.
  # ======================================================================= #
  scrolled_window_right = scrolled_window(right_buffer?)
  scrolled_window_right.clear_background
  scrolled_window_right.width_height(300, 300)
  scrolled_window_right.bblack1
  scrolled_window_right.mar2px
  # ======================================================================= #
  # === scrolled_window_left
  # ======================================================================= #
  scrolled_window_left  = scrolled_window(left_buffer?)
  scrolled_window_left.clear_background
  scrolled_window_left.width_height(300, 300)
  scrolled_window_left.bblack1
  scrolled_window_left.mar2px
  top_hpaned = gtk_hpaned(
    scrolled_window_left,
    scrolled_window_right
  ) {{ border_width: 10 }}
  this_position = (width?.to_f / 1.5).to_i
  top_hpaned.set_position(this_position)
  top_hpaned.show_all
  @dataset[:top_hbox] = top_hpaned
end

#do_determine_the_backtrack_sequence ⇒ Object Also known as: do_determine_the_DNA_sequence

#

do_determine_the_backtrack_sequence (click tag)

This will do what is necessary to find the backtrack sequence.

#


427
428
429
430
431
432
433
434
435
436
437
438
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 427

def do_determine_the_backtrack_sequence
  filter_away_invalid_aminoacids_from_the_left_buffer
  _ = left_buffer?.text?.to_s
  _.upcase!
  _ = ::Bioroebe.remove_invalid_aminoacids(_)
  left_buffer?.set_text(_)
  # ======================================================================= #
  # Ok, now we can determine the right hand side:
  # ======================================================================= #
  text_for_right_hand_side = ::Bioroebe::ProteinToDNA.new(_, :be_quiet).dna_sequence?
  right_buffer?.set_text(text_for_right_hand_side)
end

#do_upcase_all_entries ⇒ Object

#

do_upcase_all_entries

#


547
548
549
550
551
552
553
554
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 547

def do_upcase_all_entries
  [
    @entry_on_top,
    @entry_on_bottom
  ].each {|entry|
    entry.do_upcase
  }
end

#entry1? ⇒ Boolean Also known as: entry1

#

entry1?

#

Returns:

  • (Boolean) 


175
176
177
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 175

def entry1?
  @entry_on_top
end

#filter_away_invalid_aminoacids_from_the_left_buffer ⇒ Object

#

filter_away_invalid_aminoacids_from_the_left_buffer

This method is used to “sanitize” the input - invalid aminoacids are flat out removed.

#


386
387
388
389
390
391
392
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 386

def filter_away_invalid_aminoacids_from_the_left_buffer
  _ = left_buffer?.text?.to_s
  possible_new_text = Bioroebe.strict_filter_away_invalid_aminoacids(_)
  unless _ == possible_new_text
    left_buffer?.set_text(possible_new_text)
  end
end

#handle_CSS_rules ⇒ Object Also known as: handle_CSS

#

handle_CSS_rules (CSS tag, css tag)

#


320
321
322
323
324
325
326
327
328
329
330
331
332
333
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 320

def handle_CSS_rules
  use_gtk_paradise_project_css_file
  append_project_css_file
  add_these_custom_CSS_rules '

#custom_treeview.view header button {
background-color: white;
color: royalblue;
font-weight: bold;
font-size: larger;
padding: 8px;
}'
  apply_the_CSS_rules
end

#jump_into_the_first_entry ⇒ Object

#

jump_into_the_first_entry

#


617
618
619
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 617

def jump_into_the_first_entry
  entry1?.do_focus
end

#left_buffer? ⇒ Boolean Also known as: left?

#

left_buffer?

#

Returns:

  • (Boolean) 


418
419
420
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 418

def left_buffer?
  @dataset[:left_buffer]
end

#main_font? ⇒ Boolean

#

main_font?

#

Returns:

  • (Boolean) 


306
307
308
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 306

def main_font?
  USE_THIS_FONT
end

#menu(i = nil) ⇒ Object

#

menu (menu tag)

#


338
339
340
341
342
343
344
345
346
347
348
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 338

def menu(i = nil)
  if i
    if i.is_a? Array
      i.each {|entry| menu(entry) }
    else
      case i # case tag
      when ''
      end
    end
  end
end

#padding? ⇒ Boolean

#

padding?

#

Returns:

  • (Boolean) 


147
148
149
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 147

def padding?
  PADDING_TO_USE
end

#reset ⇒ Object

#

reset (reset tag)

#


115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 115

def reset
  super() if respond_to?(:super)
  reset_the_internal_variables
  reset_the_base_module # This must come after reset_the_internal_variables().
  infer_the_namespace
  # ======================================================================= #
  # === @configuration
  # ======================================================================= #
  @configuration = [true, __dir__, namespace?]
  # ======================================================================= #
  # === Set the title, width, height and the font in use.
  # ======================================================================= #
  title_width_height_font(TITLE, WIDTH, HEIGHT, USE_THIS_FONT)
  handle_CSS if use_gtk3?
  set_border_width(5)
end

#right_buffer? ⇒ Boolean Also known as: right?

#

right_buffer?

#

Returns:

  • (Boolean) 


397
398
399
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 397

def right_buffer?
  @dataset[:right_buffer]
end

#run ⇒ Object

#

run (run tag)

#


520
521
522
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 520

def run
  run_super
end

#seq1? ⇒ Boolean

#

seq1?

#

Returns:

  • (Boolean) 


161
162
163
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 161

def seq1?
  @entry_on_top.text
end

#seq2? ⇒ Boolean

#

seq2?

#

Returns:

  • (Boolean) 


168
169
170
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 168

def seq2?
  @entry_on_bottom.text
end

#set_aminoacid_sequence(i) ⇒ Object

#

set_aminoacid_sequence

#


404
405
406
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 404

def set_aminoacid_sequence(i)
  @dataset[:left_buffer].set_text(i.to_s)
end

#slightly_smaller_font? ⇒ Boolean

#

slightly_smaller_font?

#

Returns:

  • (Boolean) 


313
314
315
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 313

def slightly_smaller_font?
  USE_THIS_SLIGHTLY_SMALLER_FONT
end

#top_hbox? ⇒ Boolean

#

top_hbox?

#

Returns:

  • (Boolean) 


527
528
529
 
# File 'lib/bioroebe/gui/universal_widgets/hamming_distance/hamming_distance.rb', line 527

def top_hbox?
  @dataset[:top_hbox]
end