Module: Bioroebe::Blosum

Defined in:
lib/bioroebe/blosum/blosum.rb

Overview

Bioroebe::Blosum

Class Method Summary collapse

Class Method Details

.available_blosum_files? ⇒ Boolean

#

Bioroebe::Blosum.available_blosum_files?

This method will return an Array, containing all .yml files that represent a BLOSUM matrix.

#

Returns:

  • (Boolean) 


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# File 'lib/bioroebe/blosum/blosum.rb', line 49

def self.available_blosum_files?
  Dir[
    ::Bioroebe.blosum_directory?+'*.yml'
  ]
end

.show_as_2D_table(of_this_file = :blosum45) ⇒ Object

#

Bioroebe::Blosum.show_as_2D_table

This variant will show a 2D table of the dataset at hand.

#


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# File 'lib/bioroebe/blosum/blosum.rb', line 60

def self.show_as_2D_table(
    of_this_file = :blosum45
  )
  ::Bioroebe::BlosumParser.show_as_2D_table(of_this_file)
end

.show_matrix(of_this_file = :blosum45) ⇒ Object

#

Bioroebe::Blosum.show_matrix

This method can be used to show a specific BLOSUM matrix.

#


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# File 'lib/bioroebe/blosum/blosum.rb', line 26

def self.show_matrix(
    of_this_file = :blosum45
  )
  unless Bioroebe.const_defined? :BlosumParser
    require 'bioroebe/parsers/blosum_parser.rb'
  end
  if of_this_file.is_a? Array
    of_this_file = of_this_file.first
  end
  file = ::Bioroebe.blosum_directory?+of_this_file.to_s.dup
  file << '.yml' unless file.end_with? '.yml'
  hash = ::Bioroebe::BlosumParser.new(file) { :be_quiet }.hash?
  hash.each_pair {|key, value|
    puts "#{key}: #{value}"
  } 
end