Class: Bioroebe::Biomart::Server
- Inherits:
-
Object
- Object
- Bioroebe::Biomart::Server
show all
- Includes:
- Bioroebe::Biomart
- Defined in:
- lib/bioroebe/biomart/server.rb
Overview
Bioroebe::Biomart::Attribute
Instance Method Summary
collapse
#request
Constructor Details
#initialize(url) ⇒ Server
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# File 'lib/bioroebe/biomart/server.rb', line 22
def initialize(url)
@url = url or raise ArgumentError, 'must pass :url'
unless @url =~ /martservice/
@url = @url+'/martservice'
end
reset
end
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Instance Method Details
#alive? ⇒ Boolean
#
alive?
Simple heartbeat function to test that a Biomart server is online. Returns true/false.
#
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# File 'lib/bioroebe/biomart/server.rb', line 114
def alive?
begin
@databases = {}
self.list_databases
rescue Biomart::BiomartError => error
pp error
return false
else
return true
end
end
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#databases? ⇒ Hash
Also known as:
databases
#
databases?
Returns a hash (keyed by the biomart ‘name’ for the database) of all of the Biomart::Database objects belonging to this server.
database name.
#
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# File 'lib/bioroebe/biomart/server.rb', line 75
def databases?
if @databases.empty?
fetch_databases
end
return @databases
end
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#datasets? ⇒ Boolean
Also known as:
datasets
#
datasets?
Returns a hash (keyed by the biomart ‘name’ for the dataset) of all of the Biomart::Dataset objects belonging to this server.
#
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# File 'lib/bioroebe/biomart/server.rb', line 101
def datasets?
if @datasets.empty?
fetch_datasets
end
return @datasets
end
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#list_databases ⇒ Array
#
list_databases
Returns an array of the database names (biomart ‘name’) for this dataset.
#
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# File 'lib/bioroebe/biomart/server.rb', line 52
def list_databases
if @databases.empty?
fetch_databases
end
return @databases.keys
end
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#list_datasets ⇒ Object
#
list_datasets
Returns an array of the dataset names (biomart ‘name’) for this dataset.
#
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# File 'lib/bioroebe/biomart/server.rb', line 88
def list_datasets
if @datasets.empty?
fetch_datasets
end
return @datasets.keys
end
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#reset ⇒ Object
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# File 'lib/bioroebe/biomart/server.rb', line 33
def reset
@databases = {}
@datasets = {}
end
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#url? ⇒ Boolean
Also known as:
url
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# File 'lib/bioroebe/biomart/server.rb', line 62
def url?
@url
end
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