Module: Bio::GFFbrowser::Helpers::Logger

Includes:
Log
Included in:
Digest::LruCacheHelpers::SeekLinkedRecs, Digest::LruTracker, Digest::NoCacheHelpers::SeekLinkedRecs, Digest::Parser, FastLineParser, Gff3Component, Gff3Sequence, LinkedRecs, Record
Defined in:
lib/bio/output/gfflogger.rb

Instance Method Summary collapse

Instance Method Details

#debug(str, id = '') ⇒ Object 



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# File 'lib/bio/output/gfflogger.rb', line 10

def debug str, id=''
  log = LoggerPlus['bio-gff3']
  log.debug str+" <#{id}>"
end

#error(str, id = '') ⇒ Object 



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# File 'lib/bio/output/gfflogger.rb', line 25

def error str, id=''
  log = LoggerPlus['bio-gff3']
  log.error_(str+" <#{id}>",:act => FailOnError.new)

end

#info(str, id = '') ⇒ Object 



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# File 'lib/bio/output/gfflogger.rb', line 15

def info str, id=''
  log = LoggerPlus['bio-gff3']
  log.info str+" <#{id}>"
end

#log_sys_info(msg) ⇒ Object 



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# File 'lib/bio/output/gfflogger.rb', line 31

def log_sys_info msg
  log = LoggerPlus['bio-gff3']
  rmem = `ps -o rss= -p #{Process.pid}`.to_i
  vmem = `ps -o vsz= -p #{Process.pid}`.to_i
  if rmem or vmem
    log.info7 "Memory used #{msg} RAM #{rmem/1024}M, VMEM #{vmem/1024}M"
  end
end

#warn(str, id = '') ⇒ Object 



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# File 'lib/bio/output/gfflogger.rb', line 20

def warn str, id=''
  log = LoggerPlus['bio-gff3']
  log.warn str+" <#{id}>"
end