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#RNA Top Level Namespace
#base_pairs ViennaRna::RnaExtensions::StructureBasedClassAndInstanceMethods
batch ViennaRna::Base
#bin ViennaRna::Subopt
bootstrap ViennaRna::Base
bootstrap_from_file ViennaRna::Xbor
#bp_distance ViennaRna::RnaExtensions::StructureBasedClassAndInstanceMethods
#collection ViennaRna::Batch
const_missing ViennaRna
#counts ViennaRna::Rnabor
#data ViennaRna::Base
debug ViennaRna
debug= ViennaRna
debugger ViennaRna::Base
#debugger ViennaRna::Base
#dishuffle ViennaRna::RnaExtensions::InstanceMethods
#distribution ViennaRna::Rnabor
#distribution ViennaRna::Fftbor
#each ViennaRna::Batch
exec_exists? ViennaRna::Base
#exec_name ViennaRna::Base
#exec_sequence_format ViennaRna::Base
#expected_k ViennaRna::Xbor
fastas_from_file ViennaRna::Utils
#full_distribution ViennaRna::Xbor
#gc_content ViennaRna::RnaExtensions::InstanceMethods
#generate_sequence ViennaRna::RnaExtensions::ClassMethods
#get_pairings ViennaRna::RnaExtensions::StructureBasedClassAndInstanceMethods
graph ViennaRna::Graphing::R
histogram ViennaRna::Graphing::Gnuplot
histogram ViennaRna::Graphing::R
included ViennaRna::RnaExtensions
init_from_array ViennaRna::Rna
init_from_fasta ViennaRna::Rna
init_from_hash ViennaRna::Rna
init_from_self ViennaRna::Rna
init_from_string ViennaRna::Rna
#initialize ViennaRna::Batch
#initialize ViennaRna::Rna
#initialize ViennaRna::Base
#inspect ViennaRna::Xbor
#inspect ViennaRna::Rna
#k_p_points ViennaRna::Xbor
#max_bp_distance ViennaRna::RnaExtensions::StructureBasedClassAndInstanceMethods
method_added ViennaRna::Base
#mfe ViennaRna::Fold
#mfe ViennaRna::Eval
#mfe_rna ViennaRna::Fold
#non_zero_shells ViennaRna::Rnabor
parse ViennaRna::Xbor
#partition ViennaRna::Rnabor
#partition ViennaRna::Fftbor
pdf ViennaRna::Graphing::R
plot ViennaRna::Graphing::Gnuplot
#post_process ViennaRna::Eval
#post_process ViennaRna::Fold
#post_process ViennaRna::Heat
#post_process ViennaRna::Subopt
#pre_run_check ViennaRna::Base
quick_overlay ViennaRna::Graphing::Gnuplot
quick_plot ViennaRna::Graphing::Gnuplot
#quick_plot ViennaRna::Xbor
#raw_data ViennaRna::Rna
regress ViennaRna::Utils
#response ViennaRna::Base
rnafold_mfe ViennaRna::Parser
rnafold_mfe_structure ViennaRna::Parser
roc ViennaRna::Graphing::R
roc ViennaRna::Graphing::Gnuplot
#run ViennaRna::Batch
#run ViennaRna::Base
run ViennaRna::Base
#run ViennaRna::Rna
#run_command ViennaRna::Xbor
#run_with_hooks ViennaRna::Base
#runtime ViennaRna::Base
#sequence ViennaRna::Rna
#shuffle ViennaRna::RnaExtensions::ClassMethods
#specific_heats ViennaRna::Heat
splot ViennaRna::Graphing::Gnuplot
#stringify_flags ViennaRna::Base
#structure ViennaRna::Fold
#structure ViennaRna::Rna
#structures ViennaRna::Subopt
#symmetric_bp_distance ViennaRna::RnaExtensions::StructureBasedClassAndInstanceMethods
#total_count ViennaRna::Fftbor
#total_count ViennaRna::Rnabor
#type ViennaRna::Batch
#with_different_structures ViennaRna::Fold::Batch
#write_fa! ViennaRna::Rna
write_fastas! ViennaRna::Utils