Method List
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#<=> ViennaRna::Package::EnergyGrid2d::Row2d
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#RNA Top Level Namespace
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aligned_distributions ViennaRna::Package::EnergyGrid2d
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#barrier ViennaRna::Package::TabuPath::Path
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#barrier ViennaRna::Package::Kinwalker::Node
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#base_flags ViennaRna::Global::RunExtensions::InstanceMethods
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#base_pairs ViennaRna::Global::RnaExtensions::OneStructureBasedMethods
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#best_weight ViennaRna::Package::TabuPath::Path
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#bin ViennaRna::Package::Subopt
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#boltzmann_probability ViennaRna::Global::RnaExtensions::InstanceMethods
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bootstrap ViennaRna::Package::Base
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#bp_distance ViennaRna::Global::RnaExtensions::TwoStructureBasedMethods
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#chain ViennaRna::Global::ChainExtensions::InstanceMethods
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#comment ViennaRna::Global::Rna
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const_missing ViennaRna::Package
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#counts ViennaRna::Package::Rnabor
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#data ViennaRna::Package::Base
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debug ViennaRna
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debug= ViennaRna
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debugger ViennaRna
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#debugger ViennaRna::Package::Base
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deserialize ViennaRna
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#dishuffle ViennaRna::Global::RnaExtensions::InstanceMethods
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#distribution ViennaRna::Package::Rna2dfold
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#distribution ViennaRna::Package::Fftbor2d
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#distribution ViennaRna::Package::Fftbor
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#distribution ViennaRna::Package::EnergyGrid2d::EnergyGrid2dWrapper
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#distribution ViennaRna::Package::Rnabor
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#each ViennaRna::Package::EnergyGrid2d
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#eigenvalues ViennaRna::Package::Spectral
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#empty_structure ViennaRna::Global::Rna
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#energy ViennaRna::Package::Kinwalker::Node
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#energy_barrier ViennaRna::Package::Kinwalker::Node
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#ensemble ViennaRna::Package::EnergyGrid2d::Row2d
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#ensemble_energy ViennaRna::Package::Fold
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#exec_exists? ViennaRna::Global::RunExtensions::ClassMethods
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#exec_name ViennaRna::Global::RunExtensions::InstanceMethods
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#expected_k ViennaRna::Package::Xbor
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#flags ViennaRna::Package::Base
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#full_distribution ViennaRna::Package::Xbor
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#full_path? ViennaRna::Package::TabuPath::Path
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#gc_content ViennaRna::Global::RnaExtensions::InstanceMethods
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#generate_sequence ViennaRna::Global::RnaExtensions::ClassMethods
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#get_pairings ViennaRna::Global::RnaExtensions::OneStructureBasedMethods
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graph ViennaRna::Graphing::R
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histogram ViennaRna::Graphing::R
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#i ViennaRna::Package::EnergyGrid2d::Row2d
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included ViennaRna::Global::RunExtensions
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included ViennaRna::Global::ChainExtensions
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included ViennaRna::Global::RnaExtensions
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inherited ViennaRna::Package::EnergyGrid2d
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init_from_array ViennaRna::Global::Rna
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init_from_fasta ViennaRna::Global::Rna
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init_from_hash ViennaRna::Global::Rna
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init_from_self ViennaRna::Global::Rna
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init_from_string ViennaRna::Global::Rna
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#initialize ViennaRna::Package::Population::Population
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#initialize ViennaRna::Global::Rna
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#initialize ViennaRna::Package::Kinwalker::Node
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#initialize ViennaRna::Package::TabuPath::Path
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#initialize ViennaRna::Package::Base
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#initialize ViennaRna::Package::EnergyGrid2d::Row2d
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#inspect ViennaRna::Global::Rna
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#inspect ViennaRna::Package::Base
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#inspect ViennaRna::Package::EnergyGrid2d
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#inspect ViennaRna::Package::Xbor
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#inspect ViennaRna::Package::TabuPath::Path
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#inspect ViennaRna::Package::EnergyGrid2d::Row2d
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#j ViennaRna::Package::EnergyGrid2d::Row2d
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#k_p_points ViennaRna::Package::Xbor
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#length ViennaRna::Package::TabuPath::Path
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line_graph ViennaRna::Graphing::R
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load_all RNA
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lookup ViennaRna::Package
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matrix_heatmap ViennaRna::Graphing::R
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#max_bp_distance ViennaRna::Global::RnaExtensions::OneStructureBasedMethods
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#method_missing ViennaRna::Global::Rna
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method_missing RNA
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#mfe ViennaRna::Package::Fold
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#mfe ViennaRna::Package::Eval
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#mfe_rna ViennaRna::Package::Fold
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#mfpt ViennaRna::Package::Mfpt
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#mfpt ViennaRna::Package::FftMfpt
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#mfpt ViennaRna::Package::Kinwalker
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#nodes ViennaRna::Package::Kinwalker
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#non_zero_shells ViennaRna::Package::Rnabor
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#one_structure ViennaRna::Global::Rna
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overlay ViennaRna::Graphing::R
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#p ViennaRna::Package::EnergyGrid2d::Row2d
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parse ViennaRna::Package::Xbor
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#partition ViennaRna::Package::Rnabor
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#partition ViennaRna::Package::Fftbor
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#path ViennaRna::Package::TabuPath::Path
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#paths ViennaRna::Package::TabuPath
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#population_proportion_for_str_1 ViennaRna::Package::Population
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#population_proportion_str_2_from_str_1 ViennaRna::Package::Population
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#position ViennaRna::Package::EnergyGrid2d::Row2d
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#post_process ViennaRna::Package::Mfpt
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#post_process ViennaRna::Package::Heat
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#post_process ViennaRna::Package::Fold
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#post_process ViennaRna::Package::Eval
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#post_process ViennaRna::Package::Population
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#post_process ViennaRna::Package::Subopt
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#post_process ViennaRna::Package::Spectral
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#post_process ViennaRna::Package::FftMfpt
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#post_process ViennaRna::Package::TabuPath
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#post_process ViennaRna::Package::Kinwalker
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#pre_run_check ViennaRna::Global::RunExtensions::InstanceMethods
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#proportion_over_time ViennaRna::Package::Population::Population
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#proportion_points ViennaRna::Package::Population::Population
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#quick_plot ViennaRna::Package::Xbor
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#quick_plot ViennaRna::Package::EnergyGrid2d
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random RNA
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#recursively_merge_flags ViennaRna::Global::RunExtensions::InstanceMethods
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#response ViennaRna::Package::Base
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#rna ViennaRna::Package::TabuPath::Path
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rnafold_ensemble_energy ViennaRna::Global::Parser
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rnafold_mfe ViennaRna::Global::Parser
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rnafold_mfe_structure ViennaRna::Global::Parser
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roc ViennaRna::Graphing::R
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roc_overlay ViennaRna::Graphing::R
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#run ViennaRna::Global::RunExtensions::InstanceMethods
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#run ViennaRna::Global::Rna
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#run ViennaRna::Global::RunExtensions::ClassMethods
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#run_command ViennaRna::Package::TabuPath
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#run_command ViennaRna::Package::Rna2dfold
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#run_command ViennaRna::Package::Spectral
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#run_command ViennaRna::Package::Fftbor2d
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#run_command ViennaRna::Package::FftMfpt
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#run_command ViennaRna::Package::Xbor
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#run_command ViennaRna::Package::Mfpt
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#run_command ViennaRna::Package::Plot
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#run_command ViennaRna::Global::RunExtensions::InstanceMethods
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#run_command ViennaRna::Package::Population
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#runtime ViennaRna::Package::Base
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scatterplot ViennaRna::Graphing::R
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#second_structure ViennaRna::Global::Rna
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#sequence ViennaRna::Global::Rna
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#serialize ViennaRna::Package::Base
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set_of_points ViennaRna::Package::EnergyGrid2d
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#shuffle ViennaRna::Global::RnaExtensions::ClassMethods
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#specific_heats ViennaRna::Package::Heat
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#stringify_flags ViennaRna::Global::RunExtensions::InstanceMethods
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#structure ViennaRna::Package::Kinwalker::Node
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#structure ViennaRna::Package::Fold
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#structure ViennaRna::Global::Rna
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#structures ViennaRna::Package::Subopt
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#temp_fa_file! ViennaRna::Global::Rna
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#time ViennaRna::Package::Kinwalker::Node
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#time_kinetics ViennaRna::Package::Spectral
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#time_points ViennaRna::Package::Population::Population
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#time_range ViennaRna::Package::Population::Population
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#to_csv ViennaRna::Package::EnergyGrid2d::Row2d
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#to_csv ViennaRna::Package::Xbor
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#to_csv ViennaRna::Package::EnergyGrid2d
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#to_csv! ViennaRna::Package::EnergyGrid2d
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#to_csv! ViennaRna::Package::Xbor
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#total_count ViennaRna::Package::Fftbor
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#total_count ViennaRna::Package::Rnabor
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#transcribed ViennaRna::Package::Kinwalker::Node
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#transform_for_chaining ViennaRna::Package::Mfpt
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#two_structures ViennaRna::Global::Rna
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#write_fa! ViennaRna::Global::Rna