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#[] Unipept::Configuration
#[]= Unipept::Configuration
#add_config_command Unipept::Commands::Unipept
#add_pept2ec_command Unipept::Commands::Unipept
#add_pept2funct_command Unipept::Commands::Unipept
#add_pept2go_command Unipept::Commands::Unipept
#add_pept2interpro_command Unipept::Commands::Unipept
#add_pept2lca_command Unipept::Commands::Unipept
#add_pept2prot_command Unipept::Commands::Unipept
#add_pept2taxa_command Unipept::Commands::Unipept
#add_peptinfo_command Unipept::Commands::Unipept
#add_protinfo_command Unipept::Commands::Unipept
#add_taxa2lca_command Unipept::Commands::Unipept
#add_taxa2tree_command Unipept::Commands::Unipept
#add_taxonomy_command Unipept::Commands::Unipept
available Unipept::Formatter
#batch_iterator Unipept::Commands::ApiRunner
#batch_iterator Unipept::Commands::Taxa2lca
#batch_size Unipept::Commands::ApiRunner
#batch_size Unipept::Commands::Taxa2Tree
#batch_size Unipept::BatchIterator
#concurrent_requests Unipept::Commands::ApiRunner
#config Unipept::Commands::Config
#config Unipept::Configuration
#configuration Unipept::Commands::ApiRunner
#configuration Unipept::ServerMessage
#construct_request_body Unipept::Commands::ApiRunner
#convert Unipept::CSVFormatter
#convert Unipept::JSONFormatter
#convert Unipept::Formatter
#convert Unipept::HtmlFormatter
#convert Unipept::UrlFormatter
#convert Unipept::XMLFormatter
#convert Unipept::BlastFormatter
#create_root_command Unipept::Commands::Unipept
#csv_taxa2tree? Unipept::BatchIterator
default Unipept::Formatter
#default_batch_size Unipept::Commands::Pept2interpro
#default_batch_size Unipept::Commands::Peptinfo
#default_batch_size Unipept::Commands::Protinfo
#default_batch_size Unipept::Commands::Pept2funct
#default_batch_size Unipept::Commands::Taxa2lca
#default_batch_size Unipept::Commands::Pept2lca
#default_batch_size Unipept::Commands::Pept2prot
#default_batch_size Unipept::Commands::Pept2go
#default_batch_size Unipept::Commands::Pept2ec
#default_batch_size Unipept::Commands::Taxonomy
#default_batch_size Unipept::Commands::ApiRunner
#default_batch_size Unipept::Commands::Pept2taxa
#delete Unipept::Configuration
#fasta? Unipept::BatchIterator
#fetch_server_message Unipept::ServerMessage
#file_name Unipept::Configuration
filter Unipept::Commands::Peptfilter
filter_contains Unipept::Commands::Peptfilter
filter_lacks Unipept::Commands::Peptfilter
filter_length Unipept::Commands::Peptfilter
#finish RetryableTyphoeus::Request
#footer Unipept::HtmlFormatter
#footer Unipept::BlastFormatter
#footer Unipept::XMLFormatter
#footer Unipept::CSVFormatter
#footer Unipept::JSONFormatter
#footer Unipept::Formatter
#footer Unipept::UrlFormatter
#format Unipept::Formatter
#formatter Unipept::Commands::ApiRunner
formatters Unipept::Formatter
#get_config Unipept::Commands::Config
#get_keys Unipept::CSVFormatter
get_uniprot_entry Unipept::Commands::Uniprot
#group_by_first_key Unipept::Formatter
#header Unipept::UrlFormatter
#header Unipept::HtmlFormatter
#header Unipept::BlastFormatter
#header Unipept::XMLFormatter
#header Unipept::CSVFormatter
#header Unipept::Formatter
#header Unipept::JSONFormatter
hidden? Unipept::HtmlFormatter
hidden? Unipept::BlastFormatter
hidden? Unipept::UrlFormatter
hidden? Unipept::Formatter
#host Unipept::Commands::ApiRunner
#initialize Unipept::Commands::ApiRunner
#initialize Unipept::ServerMessage
#initialize Unipept::BatchIterator
#initialize Unipept::Configuration
#initialize Unipept::BatchOrder
#initialize Unipept::OutputWriter
#initialize Unipept::Commands::Pept2prot
#initialize RetryableTyphoeus::Request
#initialize Unipept::Commands::Taxa2Tree
#initialize Unipept::Commands::Unipept
#input_iterator Unipept::Commands::ApiRunner
#input_iterator Unipept::Commands::Taxa2Tree
#integrate_fasta_headers Unipept::Formatter
#iterate Unipept::BatchIterator
#iterate Unipept::Commands::SimpleBatchIterator
#message_url Unipept::ServerMessage
new_for_format Unipept::Formatter
#order Unipept::BatchOrder
#output Unipept::OutputWriter
#output_writer Unipept::Commands::ApiRunner
#print Unipept::ServerMessage
#queue_size Unipept::Commands::ApiRunner
#recently_fetched? Unipept::ServerMessage
register Unipept::Formatter
#required_fields Unipept::Commands::Pept2interpro
#required_fields Unipept::Commands::Peptinfo
#required_fields Unipept::Commands::Pept2ec
#required_fields Unipept::Commands::Pept2taxa
#required_fields Unipept::Commands::Taxonomy
#required_fields Unipept::Commands::Pept2funct
#required_fields Unipept::Commands::ApiRunner
#required_fields Unipept::Commands::Pept2prot
#required_fields Unipept::Commands::Taxa2Tree
#required_fields Unipept::Commands::Protinfo
#required_fields Unipept::Commands::Pept2go
#required_fields Unipept::Commands::Pept2lca
#retries RetryableTyphoeus::Request
#root_command Unipept::Commands::Peptfilter
#root_command Unipept::Commands::Prot2pept
#root_command Unipept::Commands::Uniprot
#run Unipept::Commands::Config
run Unipept::Commands::Peptfilter
run Unipept::Commands::Prot2pept
run Unipept::Commands::Uniprot
run Unipept::Commands::Unipept
#run Unipept::Commands::Unipept
#run Unipept::Commands::ApiRunner
#save Unipept::Configuration
#save_error Unipept::Commands::ApiRunner
#selected_fields Unipept::Commands::ApiRunner
#set_config Unipept::Commands::Config
split Unipept::Commands::Prot2pept
#to_xml Object
#to_xml Array
#to_xml Hash
#type Unipept::HtmlFormatter
#type Unipept::XMLFormatter
#type Unipept::BlastFormatter
#type Unipept::UrlFormatter
#type Unipept::CSVFormatter
#type Unipept::JSONFormatter
#type Unipept::Formatter
#update_fetched Unipept::ServerMessage
#url Unipept::Commands::ApiRunner
#user_agent Unipept::Commands::ApiRunner
#valid_formats Unipept::Commands::Uniprot
#valid_formats Unipept::Commands::Prot2pept
#wait Unipept::BatchOrder
#write_line Unipept::OutputWriter