Method List

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#cd_hit Transfuse::Cluster
#check_files Transfuse::Transfuse
#cluster Transfuse::Transfuse
#cmd Transfuse::Cmd
#concatenate Transfuse::Transfuse
#filter Transfuse::Transfuse
#generate_cdhit_command Transfuse::Cluster
#generate_vsearch_command Transfuse::Cluster
#initialize Transfuse::Cluster
#initialize Transfuse::Cmd
#initialize Transfuse::Transfuse
#load_fasta Transfuse::Transfuse
#load_scores Transfuse::Transfuse
#output_contigs Transfuse::Transfuse
#parse_output Transfuse::Cluster
#parse_vsearch_output Transfuse::Cluster
#revcomp String
#run Transfuse::Cluster
#run Transfuse::Cmd
#select_contigs Transfuse::Transfuse
#sequence_alignment Transfuse::Transfuse
#status Transfuse::Cmd
#stderr Transfuse::Cmd
#stdout Transfuse::Cmd
#success? Transfuse::Status
#to_s Transfuse::Cmd
#transrate Transfuse::Transfuse
#vsearch Transfuse::Cluster