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#<=> TraceVisualization::Mapping::Item
#build_positions TraceVisualization::Data::Repetition
#build_positions_for_repeat TraceVisualization::Data::Repetition
bwt TraceVisualization::BurrowsWheelerTransform
char_counter_inc TraceVisualization::Repetitions
concat_condition TraceVisualization::RepetitionsConcatenation
create_repetition TraceVisualization::RepetitionsIncrementation
create_repetition TraceVisualization::RepetitionsConcatenation
decode_psy1_result TraceVisualization::Repetitions
delete_repetition TraceVisualization::RepetitionsConcatenation
effective TraceVisualization::SuffixArray
effective TraceVisualization::LongestCommonPrefix
effective_linear TraceVisualization::SuffixArray
#equal_positions? IRepetition
#equal_positions? TraceVisualization::Data::Repetition
fake_repetition TraceVisualization::RepetitionsIncrementation
#get_id IRepetition
#get_left_pos IRepetition
#get_left_pos TraceVisualization::Data::Repetition
#get_right_pos IRepetition
#get_right_pos TraceVisualization::Data::Repetition
hl Travis::Visualization::ConsoleColorPrint
#id TraceVisualization::Data::Repetition
incrementation TraceVisualization::RepetitionsIncrementation
#initialize TraceVisualization::Repetitions::Context
#initialize TraceVisualization::Data::Repetition
#initialize TraceVisualization::Mapping::Item
#initialize RepetitionBase
invert TraceVisualization::Generators::Thue
#k RepetitionBase
le_letter TraceVisualization::Repetitions
#left RepetitionBase
#left_length RepetitionBase
#left_length IRepetition
#left_positions IRepetition
#left_positions TraceVisualization::Data::Repetition
#length RepetitionBase
#length TraceVisualization::Mapping::Item
#lines RepetitionBase
#lines_pos TraceVisualization::Repetitions::Context
lines_pos TraceVisualization::Utils
match TraceVisualization::Mapping
naive TraceVisualization::Repetitions
naive TraceVisualization::SuffixArray
naive TraceVisualization::BurrowsWheelerTransform
naive_all TraceVisualization::Repetitions
#ord TraceVisualization::Mapping::Item
parse TraceVisualization::Mapping
#pcount TraceVisualization::Data::Repetition
#positions_size TraceVisualization::Data::Repetition
#positions_size IRepetition
process TraceVisualization::Reorder
process TraceVisualization::RepetitionsConcatenation
process_common_positions TraceVisualization::RepetitionsConcatenation
process_full_search TraceVisualization::RepetitionsConcatenation
process_new_repetitions TraceVisualization::RepetitionsConcatenation
psy1 TraceVisualization::Repetitions
psy1_original TraceVisualization::Repetitions
restore TraceVisualization::Mapping
rhash TraceVisualization::Utils
#right RepetitionBase
#right_length IRepetition
#right_length RepetitionBase
#right_positions TraceVisualization::Data::Repetition
#right_positions IRepetition
#rs_by_line TraceVisualization::Repetitions::Context
rs_by_line TraceVisualization::Utils
#score TraceVisualization::Data::Repetition
#set_left_pos IRepetition
#set_left_pos TraceVisualization::Data::Repetition
#src TraceVisualization::Mapping::Item
str TraceVisualization::Generators::Fibonacci
#str TraceVisualization::Repetitions::Context
str_2_3 TraceVisualization::Generators::Thue
str_3_2 TraceVisualization::Generators::Thue
#strict_ids TraceVisualization::Data::Repetition
#strict_length IRepetition
#strict_length RepetitionBase
#to_s TraceVisualization::Data::Repetition
#to_str TraceVisualization::Mapping::Item
#type TraceVisualization::Mapping::Item
#value TraceVisualization::Mapping::Item