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#+ SequenceLogo::Alignment
#== Bioinform::MotifModel::DiPM
#add_image SequenceLogo::HorizontalGluingCanvas
#add_image SequenceLogo::VerticalGluingCanvas
#add_image SequenceLogo::GluingCanvas
#add_letter SequenceLogo::LogoCanvas
#add_position_ordered SequenceLogo::LogoCanvas
#allele_variants SequenceLogo::SequenceWithSNP
#arglist_augmented_with_stdin Top Level Namespace
#background SequenceLogo::GluingCanvas
#background_fill SequenceLogo::CanvasFactory
basename_wo_extname File
#canvas_factory SequenceLogo::LogoCanvas
complement SequenceLogo::Sequence
#direct_image SequenceLogo::PredefinedLogo
#direct_output_filename Top Level Namespace
#draw_threshold_line SequenceLogo::LogoCanvas
#each_position Bioinform::MotifModel::DiPM
#enable_threshold_lines SequenceLogo::PPMLogo
#fill Magick::SolidFill
from_file Bioinform::MotifModel::DiPM
from_string SequenceLogo::SequenceWithSNP
#get_logo Bioinform::MotifModel::PCM
#get_logo_discrete Bioinform::MotifModel::PCM
#get_logo_weblogo Bioinform::MotifModel::PCM
#i_logo SequenceLogo::GluingCanvas
#icd2of4 Top Level Namespace
#icd3of4 Top Level Namespace
#icd4of4 Top Level Namespace
#icdThc Top Level Namespace
#icdTlc Top Level Namespace
#icd_mode SequenceLogo::PPMLogo
#image SequenceLogo::GluingCanvas
#in_necessary_orientations Top Level Namespace
#initialize SequenceLogo::Alignment
#initialize SequenceLogo::Sequence
#initialize SequenceLogo::Alignment::Item
#initialize SequenceLogo::GluingCanvas
#initialize SequenceLogo::PPMLogo
#initialize SequenceLogo::SequenceWithSNP
#initialize Bioinform::MotifModel::DiPM
#initialize SequenceLogo::CLI
#initialize SequenceLogo::PredefinedLogo
#initialize SequenceLogo::CanvasFactory
#initialize SequenceLogo::LogoCanvas
#initialize Magick::SolidFill
#left SequenceLogo::SequenceWithSNP
#length SequenceLogo::PredefinedLogo
#length SequenceLogo::Sequence
#length SequenceLogo::Alignment::Item
#length Bioinform::MotifModel::DiPM
#length SequenceLogo::PPMLogo
#length SequenceLogo::SequenceWithSNP
#letter_image SequenceLogo::CanvasFactory
letter_images SequenceLogo::CanvasFactory
#letter_images SequenceLogo::CanvasFactory
#letter_index SequenceLogo::CanvasFactory
#load_alignment_infos Top Level Namespace
#log_fact Float
#log_fact Integer
#logo_canvas SequenceLogo::CanvasFactory
#logo_for_ordered_letters SequenceLogo::CanvasFactory
#logo_matrix SequenceLogo::PPMLogo
#logo_shift SequenceLogo::CanvasFactory
#logo_with_name SequenceLogo::CanvasFactory
#make_logo_alignment Top Level Namespace
#matrix Bioinform::MotifModel::DiPM
#name SequenceLogo::Sequence
#name SequenceLogo::Alignment::Item
#name SequenceLogo::PredefinedLogo
#name SequenceLogo::SequenceWithSNP
#name SequenceLogo::PPMLogo
#named Bioinform::MotifModel::DiPM
#object SequenceLogo::Alignment::Item
#options SequenceLogo::CLI
#parse_options! SequenceLogo::CLI
#parser SequenceLogo::CLI
#position_infocod Top Level Namespace
#ppm SequenceLogo::PPMLogo
#put_image_at Magick::ImageList
#readlines_from_file_or_stdin Top Level Namespace
#render SequenceLogo::Alignment
#render SequenceLogo::Alignment::Item
#render SequenceLogo::PredefinedLogo
#render SequenceLogo::Sequence
#render SequenceLogo::PPMLogo
#render SequenceLogo::SequenceWithSNP
#render_threshold_line SequenceLogo::LogoCanvas
#revcomp SequenceLogo::SequenceWithSNP
#revcomp SequenceLogo::Alignment
#revcomp SequenceLogo::PredefinedLogo
#revcomp SequenceLogo::Sequence
revcomp SequenceLogo::Sequence
#revcomp SequenceLogo::PPMLogo
#reverse_image SequenceLogo::PredefinedLogo
#reverse_output_filename Top Level Namespace
#right SequenceLogo::SequenceWithSNP
#scale Top Level Namespace
#sequence SequenceLogo::Sequence
#set_minimal_size Magick::ImageList
#shift SequenceLogo::Alignment::Item
#shifted_logo SequenceLogo::CanvasFactory
#size SequenceLogo::GluingCanvas
#sum_dependent_on_first_letter Bioinform::MotifModel::DiPCM
#sum_dependent_on_second_letter Bioinform::MotifModel::DiPCM
#text_image SequenceLogo::CanvasFactory
#text_size SequenceLogo::CanvasFactory
#to_mono Bioinform::MotifModel::DiPCM
#to_s Bioinform::MotifModel::DiPM
valid_sequence? SequenceLogo::Sequence
#x_size SequenceLogo::VerticalGluingCanvas
#x_size SequenceLogo::HorizontalGluingCanvas
#x_unit SequenceLogo::CanvasFactory
#y_size SequenceLogo::VerticalGluingCanvas
#y_size SequenceLogo::HorizontalGluingCanvas
#y_unit SequenceLogo::CanvasFactory