Method List
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#== IUPAC
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#average Array
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#best_hit Ytilib::PM
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#best_score Ytilib::PPM
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#best_score Ytilib::PM
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#best_word Ytilib::PM
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calc_probs Ytilib::Randoom
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calc_probs_m Ytilib::Randoom
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#checkerr Top Level Namespace
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col_sum Ytilib::PM
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#col_sum Ytilib::PM
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#collect_hits Ytilib::PM
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#compl String
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#compl IUPAC
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#compl! String
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#compl! IUPAC
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#consensus Ytilib::PM
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#consensus_string Ytilib::PM
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create_canvas SequenceLogo
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#cut_to Float
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#deep_dup Object
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draw_letters_on_canvas SequenceLogo
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draw_logo SequenceLogo
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draw_threshold_lines SequenceLogo
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#dup Ytilib::PM
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#dup IUPAC
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#eql? Ytilib::PM
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equalize! Ytilib::Randoom
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ext_wo_name File
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#fast_score_sigma Ytilib::PM
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#fast_score_sigma_precise Ytilib::PM
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#find_hit Ytilib::PM
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#find_hits Ytilib::PM
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#fixwc Ytilib::PM
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#flexeql? Ytilib::PM
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from_IUPAC Ytilib::PPM
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from_bismark Ytilib::PM
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#generate_glued_logo Top Level Namespace
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#getXML Ytilib::Bismark
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#get_consensus Ytilib
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#get_line PPM
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#get_logo PPM
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#get_pcm Ytilib::PPM
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#get_pm Ytilib::Bismark
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#get_ppm Ytilib::PM
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#get_ppm PPM
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#get_ppm_from_file Top Level Namespace
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#get_pwm Ytilib::PM
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#get_pwm Ytilib::PPM
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#get_pwm0pc Ytilib::PPM
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glue_files SequenceLogo
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#icd Ytilib::PPM
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#icd2of4 Ytilib::PM
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#icd3of4 Ytilib::PM
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#icd4of4 Ytilib::PM
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#icdThc Ytilib::PM
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#icdTlc Ytilib::PM
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#include? IUPAC
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#infocod Ytilib::PM
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#infocod Ytilib::PPM
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#initialize Ytilib::PM
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#initialize IUPAC
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#initialize REXML::Formatters::Transitive
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#initialize Ytilib::PPM
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#initialize Ytilib::Bismark
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#initialize SequenceLogo::CLI
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#iupacomp! Ytilib::PPM
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#iupacomp! Ytilib::PM
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letter_images SequenceLogo
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load Ytilib::PM
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#log_fact Integer
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#log_fact Float
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#m3sd Ytilib::PM
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make_probs! Ytilib::Randoom
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make_probs_m! Ytilib::Randoom
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#matrix Ytilib::PM
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#merge IUPAC
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mfa2array Ytilib
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#name PPM
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name_wo_ext File
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new_mysql_conn Ytilib
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new_pcm Ytilib::PM
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new_pwm Ytilib::PM
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#options SequenceLogo::CLI
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#p_value Ytilib::PM
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#parse_options! SequenceLogo::CLI
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#parser SequenceLogo::CLI
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#positiv! Ytilib::PM
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#prev String
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#prev! String
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probs2IUPAC! Ytilib::PPM
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rand_seq Ytilib::Randoom
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read_mfa2array Ytilib
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read_mfa2hash Ytilib
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read_plain2array Ytilib
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read_seqs2array Ytilib
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#report Top Level Namespace
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#revcomp PPM
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#revcomp String
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#revcomp! Ytilib::PM
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#revcomp! String
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#reverse IUPAC
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#reverse_string IUPAC
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#round_to Float
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#save Ytilib::PM
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#score Ytilib::PPM
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#score Ytilib::PM
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#score_mean Ytilib::PM
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#score_sigma Ytilib::PM
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#score_variance Ytilib::PM
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#shuffle Array
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#shuffle! Array
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#size Ytilib::PM
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#start Top Level Namespace
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#strict_consensus Ytilib::PM
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#sum Array
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time Ytilib
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#to_bismark Ytilib::PPM
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#to_bismark Ytilib::PM
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#to_id String
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#to_pwm! Ytilib::PPM
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#to_pwm! Ytilib::PM
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twostrand! Ytilib::Randoom
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#variance Array
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#words_count Ytilib::PM
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#worst_score Ytilib::PPM
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#worst_score Ytilib::PM
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#write REXML::Document
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write_mfa Ytilib