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#[] OwlNamespace
#accept_values OpenTox::Dataset
#activities OpenTox::Model::Lazar
#actor OpenTox::ErrorReport
#acts OpenTox::Transform::ModelTransformer
#add OpenTox::Dataset
#add_algorithm OpenTox::Serializer::Owl
#add_compound OpenTox::Dataset
#add_compound OpenTox::Serializer::Owl
#add_data_entry OpenTox::Serializer::Owl
#add_dataset OpenTox::Serializer::Owl
#add_error_report OpenTox::Task
#add_feature OpenTox::Serializer::Owl
#add_feature OpenTox::Dataset
#add_feature_metadata OpenTox::Dataset
#add_fminer_data OpenTox::Algorithm::Fminer
#add_metadata OpenTox::Serializer::Owl
#add_metadata OpenTox::Dataset
#add_metadata OpenTox
#add_model OpenTox::Serializer::Owl
#add_neighbor OpenTox::Transform::ModelTransformer
#add_resource OpenTox::Serializer::Owl
#add_task OpenTox::Serializer::Owl
#add_to_dataset OpenTox::Parser::Table
#add_uri OpenTox::Serializer::Owl
all OpenTox
all OpenTox::Task
all OpenTox::Model::Lazar
all OpenTox::Dataset
#all_activities OpenTox::Algorithm::Fminer
#attributes OpenTox::PostCommand
authenticate OpenTox::Authorization
authorize OpenTox::Authorization
authorized? OpenTox::Authorization
#autoscale OpenTox::Transform::AutoScale
#autoscaler OpenTox::Transform::LogAutoScale
#autoscaler OpenTox::Transform::PCA
#boxplot OpenTox::RUtil
#cancel OpenTox::Task
#check_params OpenTox::Algorithm::Fminer
check_policy OpenTox::Authorization
#check_uniq Array
#clean_features OpenTox::Parser::Table
close_resources Spork
#code OpenTox::WrapperResult
#complete_data_entries OpenTox::Dataset
#completed OpenTox::Task
#completed? OpenTox::Task
#compound OpenTox::Model::Lazar
#compound_fingerprints OpenTox::Model::Lazar
#compounds OpenTox::Algorithm::Fminer
#compounds OpenTox::Parser::Table
#compounds OpenTox::Dataset
#compounds OpenTox::Model::Lazar
#compression OpenTox::Transform::SVD
#confidence OpenTox::LazarPrediction
#confusion_matrix OpenTox::Validation
#content_type OpenTox::WrapperResult
#convert_nils OpenTox::Transform::ModelTransformer
#copy_hash OpenTox::Dataset
cosine OpenTox::Algorithm::Similarity
cosine_num OpenTox::Algorithm::Similarity
create OpenTox::CrossvalidationReport
create OpenTox::AlgorithmComparisonReport
create OpenTox::Model::Lazar
create OpenTox::ErrorReport
create OpenTox::Dataset
create OpenTox::QMRFReport
create OpenTox::SubTask
create OpenTox::FakeSubTask
create OpenTox::Crossvalidation
create OpenTox::Task
create OpenTox::ValidationReport
create_bootstrapping_validation OpenTox::Validation
create_from_csv_file OpenTox::Dataset
create_policy OpenTox::Authorization
create_training_test_split OpenTox::Validation
create_training_test_validation OpenTox::Validation
#data OpenTox::Parser::Table
#data_entries OpenTox::Dataset
#data_matrix OpenTox::Transform::PCA
#data_matrix OpenTox::Transform::SVD
#data_transformed_matrix OpenTox::Transform::PCA
#data_transformed_matrix OpenTox::Transform::SVD
#database_activity OpenTox::Model::Lazar
#dataframe_to_dataset OpenTox::RUtil
#dataset OpenTox::Parser::Sdf
#dataset OpenTox::Parser::Spreadsheets
#dataset_to_dataframe OpenTox::RUtil
#dataset_uri? String
datasets OpenTox::Ontology::Echa
#db_class_sizes OpenTox::Algorithm::Fminer
#debug OTLogger
#default OpenTox::PostAttribute
#delete OpenTox
#delete OpenTox::Dataset
delete OpenTox::Ontology::Model
delete OpenTox::RestClientWrapper
#delete OpenTox::Policy::Rule
#delete OpenTox::Model::Lazar
delete_policies_from_uri OpenTox::Authorization
delete_policy OpenTox::Authorization
#description OpenTox::Task
#description OpenTox::PostAttribute
#descriptors OpenTox::LazarPrediction
#detect_new_values OpenTox::Parser::Spreadsheets
#double_hist_plot OpenTox::RUtil
#drop_policies OpenTox::Policies
#drop_policy OpenTox::Policies
#due_to_time OpenTox::Task
echa_endpoints OpenTox::Ontology::Echa
effect OpenTox::Algorithm
#effects OpenTox::Model::Lazar
#eigenvalue_sums OpenTox::Transform::PCA
#eigenvector_matrix OpenTox::Transform::PCA
#eigk OpenTox::Transform::SVD
#eigk_inv OpenTox::Transform::SVD
endpoints OpenTox::Ontology::Echa
#error OpenTox::Task
#error OTLogger
#error? OpenTox::Task
#errorCause OpenTox::ErrorReport
#errorCause Exception
#errorDetails OpenTox::ErrorReport
#errorReport OpenTox::Task
#errorType OpenTox::ErrorReport
exist? OpenTox::Task
exist? OpenTox::Dataset
exists? OpenTox::Ontology::Model
#feature_calculation_algorithm OpenTox::Model::Lazar
#feature_name OpenTox::Dataset
#feature_type OpenTox::Model::Generic
#feature_type OpenTox::Dataset
#feature_type OpenTox::Feature
#feature_types OpenTox::Dataset
#feature_types OpenTox::Parser::Table
#feature_value_plot OpenTox::RUtil
#feature_values OpenTox::Parser::Table
#features OpenTox::Dataset
#features OpenTox::Model::Lazar
#features OpenTox::Algorithm::Dataset
#features OpenTox::Parser::Table
find OpenTox::ValidationReport
find OpenTox::Validation
find OpenTox::QMRFReport
find OpenTox::Model::Lazar
find OpenTox::Algorithm::Generic
find OpenTox::Dataset
find OpenTox::AlgorithmComparisonReport
find OpenTox::Model::Generic
find OpenTox::Crossvalidation
find OpenTox::LazarPrediction
find OpenTox::CrossvalidationReport
find OpenTox::Feature
find OpenTox::Task
find_for_crossvalidation OpenTox::CrossvalidationReport
find_for_crossvalidation OpenTox::AlgorithmComparisonReport
find_for_model OpenTox::QMRFReport
find_for_validation OpenTox::ValidationReport
#find_or_create_report OpenTox::Validation
#find_or_create_report OpenTox::Crossvalidation
#fingerprints OpenTox::Model::Lazar
#finished OpenTox::FakeSubTask
#format OTLogger
from_cv_statistics OpenTox::Validation
from_inchi OpenTox::Compound
from_json OpenTox::Model::Lazar
from_json OpenTox::Dataset
from_name OpenTox::Compound
from_rdf OpenTox::ErrorReport
from_rdf OpenTox::Parser::Owl
from_rdfxml OpenTox::Task
from_sdf OpenTox::Compound
from_smiles OpenTox::Compound
from_yaml OpenTox::Task
gauss OpenTox::Algorithm
#get OpenTox::Policy::Rule
get OpenTox::RestClientWrapper
get Ohm::Model
get_cdk_descriptors OpenTox::Algorithm
#get_clusters OpenTox::Algorithm::StructuralClustering
get_confidence OpenTox::Algorithm::Neighbors
get_endpoint_name OpenTox::Ontology::Echa
get_jl_descriptors OpenTox::Algorithm
#get_matrices OpenTox::Transform::ModelTransformer
get_ob_descriptors OpenTox::Algorithm
get_uri_owner OpenTox::Authorization
get_user OpenTox::Authorization
#get_xml OpenTox::Authorization::AA
#http_code OpenTox::ErrorReport
#http_code OpenTox::RestCallError
#http_code OpenTox::BadRequestError
#http_code Exception
#http_code OpenTox::NotAuthorizedError
#http_code OpenTox::ServiceUnavailableError
#http_code OpenTox::NotFoundError
#http_code OpenTox::Task
#inchi OpenTox::Compound
#info OTLogger
#initialize OpenTox::RUtil
#initialize OpenTox::Policy::Subject
#initialize OpenTox::Policy::Rule
#initialize OpenTox::Transform::SVD
#initialize OpenTox::Transform::LogAutoScale
#initialize OpenTox::Policy
#initialize OpenTox::Algorithm::Lazar
#initialize OpenTox::Algorithm::BBRC
#initialize OpenTox::Algorithm::LAST
#initialize OpenTox::Policies
#initialize OpenTox::Parser::Sdf
#initialize OpenTox::Algorithm::StructuralClustering
#initialize OpenTox::PostAttribute
#initialize OpenTox::Parser::Table
#initialize OpenTox::Serializer::Spreadsheets
#initialize OpenTox::Parser::Owl::Dataset
#initialize OpenTox::Parser::Owl
#initialize OpenTox::Parser::Spreadsheets
#initialize OwlNamespace
#initialize OpenTox::Authorization::AA
#initialize OpenTox::Model::Lazar
#initialize OpenTox::Transform::PCA
#initialize OpenTox::Transform::AutoScale
#initialize OpenTox::FakeSubTask
#initialize OpenTox::SubTask
#initialize OpenTox::Transform::ModelTransformer
#initialize OpenTox::Serializer::Owl
#initialize OpenTox::Task
#initialize OpenTox
#initialize OpenTox::PostCommand
#initialize OpenTox::Compound
#initialize OpenTox::Dataset
#install_package OpenTox::RUtil
#is_mandatory OpenTox::PostAttribute
is_token_valid OpenTox::Authorization
isnull_or_singular? OpenTox::Algorithm
#link_urls String
list OpenTox::Crossvalidation
list OpenTox::Validation
list_groups OpenTox::Authorization
list_policies OpenTox::Authorization
list_policies_uris OpenTox::Authorization
list_policy OpenTox::Authorization
list_policy_uris OpenTox::Authorization
list_uri_policies OpenTox::Authorization
list_user_groups OpenTox::Authorization
#load_all OpenTox::Dataset
#load_compounds OpenTox::Dataset
#load_csv OpenTox::Parser::Spreadsheets
#load_csv OpenTox::Dataset
#load_default_policy OpenTox::Policies
load_ds_csv OpenTox::Algorithm
#load_features OpenTox::Parser::Owl::Dataset
#load_features OpenTox::Dataset
#load_json OpenTox::Dataset
#load_metadata OpenTox::Parser::Owl
#load_metadata OpenTox::Crossvalidation
#load_metadata OpenTox::Task
#load_metadata OpenTox::Validation
#load_metadata OpenTox
#load_metadata OpenTox::Dataset
#load_rdfxml OpenTox::Dataset
#load_rdfxml_file OpenTox::Dataset
#load_sdf OpenTox::Parser::Sdf
#load_sdf OpenTox::Dataset
#load_spreadsheet OpenTox::Parser::Spreadsheets
#load_spreadsheet OpenTox::Dataset
#load_uri OpenTox::Parser::Owl::Dataset
#load_xml OpenTox::Policies
#load_yaml OpenTox::Dataset
local_svm_classification OpenTox::Algorithm::Neighbors
local_svm_prop OpenTox::Algorithm::Neighbors
local_svm_regression OpenTox::Algorithm::Neighbors
logout OpenTox::Authorization
lookup OpenTox::Algorithm::Substructure
#lookup OpenTox::Compound
#match OpenTox::Compound
match OpenTox::Algorithm::Substructure
#match? OpenTox::Compound
match_hits OpenTox::Algorithm::Substructure
#match_hits OpenTox::Compound
#matching_smarts_image_uri OpenTox::Compound
#mean OpenTox::Transform::AutoScale
#measured_activities OpenTox::LazarPrediction
merge OpenTox::Dataset
#message OpenTox::ErrorReport
#metadata OpenTox
#metadata OpenTox::Dataset
#metadata OpenTox::Parser::Owl::Generic
#method_missing OwlNamespace
min_frequency OpenTox::Algorithm
#minfreq OpenTox::Algorithm::Fminer
#model OpenTox::Transform::ModelTransformer
model_uri? String
#mvlog OpenTox::Transform::LogAutoScale
#name OpenTox::PostCommand
#name OpenTox::PostAttribute
#name OpenTox::Policy::Subject
#name OpenTox::Policy::Rule
#name OpenTox::Policy
#name OpenTox::Policies
#names OpenTox::Policies
#neighbors OpenTox::LazarPrediction
#neighbors OpenTox::Transform::ModelTransformer
#neighbors OpenTox::Model::Lazar
#new_policy OpenTox::Policies
#new_rule OpenTox::Policy
#new_subject OpenTox::Policy
numeric? OpenTox::Algorithm
#object OpenTox::Serializer::Owl
#offset OpenTox::Transform::LogAutoScale
#orig_process_request Passenger::Rack::RequestHandler
outliers OpenTox::Algorithm::Similarity
#p_values OpenTox::Model::Lazar
#package_installed? OpenTox::RUtil
#paired_ttest OpenTox::RUtil
#parameter OpenTox::Model::Lazar
pc_descriptors OpenTox::Algorithm
#pcollect Array
#pid= OpenTox::Task
#policies OpenTox::Policies
#policy OpenTox::Authorization::AA
#post OpenTox::Policy::Rule
post OpenTox::RestClientWrapper
#predict OpenTox::Model::Lazar
#predict_dataset OpenTox::Model::Lazar
#predicted_confidence OpenTox::Model::Generic
#predicted_variable OpenTox::Model::Generic
#predicted_variables OpenTox::Model::Generic
#prediction_algorithm OpenTox::Model::Lazar
#prediction_confidence_feature OpenTox::Model::Lazar
#prediction_dataset OpenTox::Model::Lazar
#prediction_feature OpenTox::Algorithm::Fminer
#prediction_features OpenTox::Model::Lazar
#prediction_value_feature OpenTox::Model::Lazar
#probabilities OpenTox::Crossvalidation
#probabilities OpenTox::Validation
#process_request Passenger::Rack::RequestHandler
#progress OpenTox::SubTask
#progress OpenTox::Task
#props OpenTox::Transform::ModelTransformer
put OpenTox::RestClientWrapper
#put OpenTox::Policy::Rule
#pwd OTLogger
#query_dataset_uri OpenTox::Algorithm::StructuralClustering
#query_threshold OpenTox::Algorithm::StructuralClustering
querystring OpenTox::Ontology::Echa
#queued? OpenTox::Task
#quit_r OpenTox::RUtil
#r OpenTox::RUtil
#rdf_content OpenTox::ErrorReport
register OpenTox::Ontology::Model
#remove_nils OpenTox::Transform::ModelTransformer
#rename OpenTox::Policy::Rule
#report OpenTox::Crossvalidation
resource_to_close Spork
resources Spork
#rest_params OpenTox::RestCallError
#restore OpenTox::Transform::SVD
#restore OpenTox::Transform::PCA
#restore OpenTox::Transform::AutoScale
#restore OpenTox::Transform::LogAutoScale
#result_uri OpenTox::Task
#return_task Sinatra::Base
rfe OpenTox::Algorithm::FeatureSelection
#rules OpenTox::Policy
#run OpenTox::Model::Lazar
#run OpenTox::Model
#run OpenTox::Algorithm
#running? OpenTox::SubTask
#running? OpenTox::Task
#save OpenTox::Dataset
#save OpenTox::Model::Lazar
#send OpenTox::Authorization::AA
send_policy OpenTox::Authorization
server OpenTox::Authorization
#short_backtrace Array
sign_in OpenTox
#similarity OpenTox::Transform::ModelTransformer
#similarity_algorithm OpenTox::Transform::ModelTransformer
#similarity_algorithm OpenTox::Model::Lazar
#sims OpenTox::Transform::ModelTransformer
#smi OpenTox::Algorithm::Fminer
smiles OpenTox::Compound
#split OpenTox::Dataset
spork Spork
#statistics OpenTox::Crossvalidation
#status OpenTox::Task
#stdev OpenTox::Transform::AutoScale
#stratified_k_fold_split OpenTox::RUtil
#stratified_split OpenTox::RUtil
#subject_group OpenTox::Policy
#subjectid OpenTox::Feature
#subjectid OpenTox::Model::Lazar
#subjectid OpenTox::Authorization::AA
#subjects OpenTox::Policy
sum_size OpenTox::Algorithm
tanimoto OpenTox::Algorithm::Similarity
#target_clusters_array OpenTox::Algorithm::StructuralClustering
#task_uri? String
text_to_html OpenTox
#title OpenTox::Dataset
#to_ambit_names_hash OpenTox::Compound
#to_csv OpenTox::Dataset
#to_csv OpenTox::Serializer::Spreadsheets
#to_gif OpenTox::Compound
#to_html OpenTox::PostCommand
#to_image_uri OpenTox::Compound
#to_inchi OpenTox::Compound
#to_json OpenTox::Dataset
#to_json OpenTox::Model::Lazar
#to_json OpenTox::Serializer::Owl
#to_names OpenTox::Compound
#to_names_hash OpenTox::Compound
#to_ntriples OpenTox::Dataset
#to_ntriples OpenTox::Serializer::Owl
#to_png OpenTox::Compound
#to_rdfxml OpenTox
#to_rdfxml OpenTox::Dataset
#to_rdfxml OpenTox::ErrorReport
#to_rdfxml OpenTox::Task
#to_rdfxml OpenTox::Serializer::Owl
#to_rdfxml OpenTox::Algorithm
#to_sdf OpenTox::Compound
#to_sdf OpenTox::Dataset
#to_smiles OpenTox::Compound
#to_spreadsheet OpenTox::Dataset
#to_spreadsheet OpenTox::Serializer::Spreadsheets
#to_triple String
#to_urilist OpenTox::Dataset
#to_xls OpenTox::Dataset
#to_xml OpenTox::Policies
#to_yaml_properties OpenTox::ErrorReport
#trace OTLogger
#trained? OpenTox::Algorithm::StructuralClustering
#training_dataset OpenTox::Algorithm::Fminer
#training_dataset_uri OpenTox::Algorithm::StructuralClustering
#training_threshold OpenTox::Algorithm::StructuralClustering
#transform OpenTox::Transform::ModelTransformer
#transform OpenTox::Transform::AutoScale
#transform OpenTox::Transform::PCA
#transform_feature OpenTox::Transform::SVD
#transform_instance OpenTox::Transform::SVD
#type OpenTox::Policy::Subject
#type OwlNamespace
#uk OpenTox::Transform::SVD
#underscore String
#uri OpenTox::Compound
#uri OpenTox::PostCommand
#uri OpenTox
#uri OwlNamespace
#uri OpenTox::Policy::Rule
#uri OpenTox::Parser::Owl::Generic
#uri? String
uri_has_policy OpenTox::Authorization
#uris OpenTox::Policy
#uris OpenTox::Policies
#user OpenTox::Authorization::AA
#value OpenTox::LazarPrediction
#value OpenTox::Policy::Subject
#value_map OpenTox::Dataset
#value_map OpenTox::Model::Lazar
#vk OpenTox::Transform::SVD
#vs OpenTox::Transform::AutoScale
#vs OpenTox::Transform::LogAutoScale
#wait_for_completion OpenTox::Task
#waiting_for OpenTox::Task
#waiting_for OpenTox::SubTask
#warn OTLogger
weighted_majority_vote OpenTox::Algorithm::Neighbors
zero_variance? OpenTox::Algorithm