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#<=> OpenBEL::Plugin
#== OpenBEL::Model::RdfResource
#== OpenBEL::Plugin
#[] OpenBEL::Routes::Expressions::OrthologAdapter
#[] OpenBEL::Helpers::DependencyGraph
#[] OpenBEL::Cache::Cache
#[]= OpenBEL::Cache::Cache
#add_dependency OpenBEL::Helpers::DependencyGraph
#after OpenBEL::Routes::Expressions::BELSerializationTransform
#all OpenBEL::Storage::TripleStorage
#bel_string OpenBEL::Routes::Expressions::BELSerializationTransform
#between OpenBEL::Routes::Expressions::BELSerializationTransform
#call OpenBEL::Routes::Expressions::SequenceVariationFunctionHasLocationPredicate
#call OpenBEL::JWTMiddleware::Authentication
#call OpenBEL::Routes::Expressions::ParameterOrthologTransform
#call OpenBEL::Routes::Expressions::BELSerializationTransform
#check_configuration OpenBEL::ConfigurePlugins
check_cookie OpenBEL::JWTMiddleware
#clear OpenBEL::Cache::Cache
#configure OpenBEL::Plugin::Evidence
#configure OpenBEL::Plugin
#configure OpenBEL::Plugin::CacheKyotoCabinet
#configure_plugins OpenBEL::ConfigurePlugins
#count_evidence OpenBEL::Evidence::API
#count_evidence OpenBEL::Evidence::Evidence
#create_evidence OpenBEL::Evidence::API
#create_evidence OpenBEL::Evidence::Evidence
#create_facets OpenBEL::Evidence::FacetAPI
#create_instance OpenBEL::Plugin::CacheKyotoCabinet
#create_instance OpenBEL::Plugin::Evidence
#create_instance OpenBEL::Plugin
#current_page OpenBEL::Helpers::Pager
decode OpenBEL::JWTMiddleware
#delete OpenBEL::Helpers::DependencyGraph
#delete_all_facets OpenBEL::Evidence::EvidenceFacets
#delete_dataset OpenBEL::Evidence::Evidence
#delete_evidence OpenBEL::Evidence::Evidence
#delete_evidence_by_id OpenBEL::Evidence::API
#delete_evidence_by_id OpenBEL::Evidence::Evidence
#delete_evidence_by_query OpenBEL::Evidence::API
#delete_evidence_by_query OpenBEL::Evidence::Evidence
#delete_facets OpenBEL::Evidence::EvidenceFacets
#delete_facets OpenBEL::Evidence::Evidence
#description OpenBEL::Plugin
#description OpenBEL::Plugin::CacheKyotoCabinet
#description OpenBEL::Plugin::Evidence
#each OpenBEL::PluginRepository
#each_key OpenBEL::Helpers::DependencyGraph
encode OpenBEL::JWTMiddleware
#ensure_all_indexes OpenBEL::Evidence::Evidence
#ensure_all_indexes OpenBEL::Evidence::EvidenceFacets
#entities Oat::Adapters::BasicJson
#entity Oat::Adapters::BasicJson
#find_all_annotation_references OpenBEL::Evidence::API
#find_all_annotation_references OpenBEL::Evidence::Evidence
#find_all_namespace_references OpenBEL::Evidence::API
#find_all_namespace_references OpenBEL::Evidence::Evidence
#find_dataset_evidence OpenBEL::Evidence::Evidence
#find_evidence OpenBEL::Evidence::API
#find_evidence OpenBEL::Evidence::Evidence
#find_evidence_by_id OpenBEL::Evidence::Evidence
#find_evidence_by_id OpenBEL::Evidence::API
#find_facets OpenBEL::Evidence::EvidenceFacets
#find_facets_by_filters OpenBEL::Evidence::FacetAPI
#find_plugins OpenBEL::PluginRepository
#flush Sinatra::Helpers::Stream
for OpenBEL::Helpers::Translators
#from OpenBEL::Model::ClassMethods
#hash OpenBEL::Plugin
#hash OpenBEL::Model::RdfResource
#id OpenBEL::Plugin::Evidence
#id OpenBEL::Plugin
#id OpenBEL::Plugin::CacheKyotoCabinet
included OpenBEL::Plugin
included OpenBEL::Model
#incomplete_filters OpenBEL::Helpers
#initialize OpenBEL::Evidence::EvidenceFacets
#initialize OpenBEL::Evidence::Evidence
#initialize OpenBEL::Routes::Datasets
#initialize OpenBEL::Helpers::DependencyGraph
#initialize OpenBEL::Resource::Evidence::AnnotationTransform
#initialize OpenBEL::Helpers::Pager
#initialize OpenBEL::Storage::CacheProxy
#initialize OpenBEL::Routes::Expressions::ParameterOrthologTransform
#initialize OpenBEL::Routes::Expressions::BELSerializationTransform
#initialize OpenBEL::Model::RdfResource
#initialize OpenBEL::Routes::Annotations
#initialize OpenBEL::Routes::Namespaces
#initialize OpenBEL::Routes::Expressions
#initialize OpenBEL::Routes::Evidence
#initialize OpenBEL::Routes::Expressions::OrthologAdapter
#initialize OpenBEL::JWTMiddleware::Authentication
#invalid_fts_filters OpenBEL::Helpers
#link Oat::Adapters::BasicJson
load OpenBEL::Config
load! OpenBEL::Config
#make_filter OpenBEL::Evidence::FacetFilter
#map_citation_facets OpenBEL::Evidence::FacetFilter
#map_evidence_facets OpenBEL::Evidence::FacetFilter
#map_experiment_context_facets OpenBEL::Evidence::FacetFilter
#map_metadata_facets OpenBEL::Evidence::FacetFilter
#match_text OpenBEL::Resource::Annotations::AnnotationValueSearchResult
#match_text OpenBEL::Resource::Namespaces::NamespaceValueSearchResult
#match_text= OpenBEL::Resource::Namespaces::NamespaceValueSearchResult
#match_text= OpenBEL::Resource::Annotations::AnnotationValueSearchResult
#method_missing OpenBEL::Config::SilentProperties
#name OpenBEL::Plugin::CacheKyotoCabinet
#name OpenBEL::Plugin::Evidence
#name OpenBEL::Plugin
#next_page OpenBEL::Helpers::Pager
#object OpenBEL::Storage::TripleStorage
#on_load OpenBEL::Plugin::Evidence
#on_load OpenBEL::Plugin
#on_load OpenBEL::Plugin::CacheKyotoCabinet
#on_unload OpenBEL::Plugin
#optional_extensions OpenBEL::Plugin::Evidence
#optional_extensions OpenBEL::Plugin
#page_size OpenBEL::Helpers::Pager
#parameter_errors OpenBEL::Routes::Expressions::ParameterOrthologTransform
#parse_filters OpenBEL::Helpers
path OpenBEL::Util
plugin_for OpenBEL::Helpers::Translators
#predicate OpenBEL::Storage::TripleStorage
#previous_page OpenBEL::Helpers::Pager
#properties Oat::Adapters::BasicJson
#property Oat::Adapters::BasicJson
#puts Sinatra::Helpers::Stream
#rel Oat::Adapters::BasicJson
#remove_facets_by_filters OpenBEL::Evidence::FacetAPI
#render_evidence_collection OpenBEL::Helpers
#report_plugins_available OpenBEL::PluginManager
requested_translator OpenBEL::Helpers::Translators
requested_translator_plugin OpenBEL::Helpers::Translators
#required_extensions OpenBEL::Plugin
#required_extensions OpenBEL::Plugin::Evidence
#start_offset OpenBEL::Helpers::Pager
#subject OpenBEL::Storage::TripleStorage
to_a OpenBEL::Version
#to_hash OpenBEL::Model::RdfResource
#to_s OpenBEL::Model::RdfResource
#to_s OpenBEL::Plugin::ValidationError
to_s OpenBEL::Version
#total_pages OpenBEL::Helpers::Pager
#total_size OpenBEL::Helpers::Pager
#transform_annotation OpenBEL::Resource::Evidence::AnnotationTransform
#transform_evidence! OpenBEL::Resource::Evidence::AnnotationTransform
#transform_evidence! OpenBEL::Resource::Evidence::AnnotationGroupingTransform
#triples OpenBEL::Storage::CacheProxy
#triples OpenBEL::Storage::TripleStorage
#tsort_each_child OpenBEL::Helpers::DependencyGraph
#tsort_each_node OpenBEL::Helpers::DependencyGraph
#type OpenBEL::Plugin
#type OpenBEL::Plugin::CacheKyotoCabinet
#type OpenBEL::Plugin::Evidence
#update_evidence_by_id OpenBEL::Evidence::Evidence
#update_evidence_by_id OpenBEL::Evidence::API
#update_evidence_by_query OpenBEL::Evidence::API
#uri OpenBEL::Model::RdfResource
#validate OpenBEL::Plugin
#validate OpenBEL::Schemas
#validate OpenBEL::Plugin::CacheKyotoCabinet
#validate OpenBEL::Plugin::Evidence
#validate_filters! OpenBEL::Helpers
#wants_default? OpenBEL::Helpers
#with_plugins_from OpenBEL::PluginRepository
#write Sinatra::Helpers::Stream