Method List

Classes Methods Files

Search:

#[] HTS::Bcf::Info
#[] HTS::Bcf::Format
#[] HTS::Bam::Aux
#alleles HTS::Bcf::Record
#alt HTS::Bcf
#alt HTS::Bcf::Record
attach_function HTS::LibHTS
#aux HTS::Bam
#aux HTS::Bam::Record
#bam_aux2A HTS::LibHTS
#bam_aux2Z HTS::LibHTS
#bam_aux2f HTS::LibHTS
#bam_aux2i HTS::LibHTS
#bam_auxB2f HTS::LibHTS
#bam_auxB2i HTS::LibHTS
#bam_auxB_len HTS::LibHTS
#bam_aux_append HTS::LibHTS
#bam_aux_del HTS::LibHTS
#bam_aux_get HTS::LibHTS
#bam_aux_update_array HTS::LibHTS
#bam_aux_update_float HTS::LibHTS
#bam_aux_update_int HTS::LibHTS
#bam_aux_update_str HTS::LibHTS
#bam_cigar2qlen HTS::LibHTS
#bam_cigar2rlen HTS::LibHTS
bam_cigar_gen HTS::LibHTS
bam_cigar_op HTS::LibHTS
bam_cigar_opchr HTS::LibHTS
bam_cigar_oplen HTS::LibHTS
bam_cigar_type HTS::LibHTS
#bam_copy1 HTS::LibHTS
#bam_destroy1 HTS::LibHTS
#bam_dup1 HTS::LibHTS
#bam_endpos HTS::LibHTS
#bam_flag2str HTS::LibHTS
bam_get_aux HTS::LibHTS
bam_get_cigar HTS::LibHTS
bam_get_l_aux HTS::LibHTS
bam_get_qname HTS::LibHTS
bam_get_qual HTS::LibHTS
bam_get_seq HTS::LibHTS
#bam_hdr_read HTS::LibHTS
#bam_hdr_write HTS::LibHTS
#bam_init1 HTS::LibHTS
bam_is_mrev HTS::LibHTS
bam_is_rev HTS::LibHTS
#bam_mods_at_next_pos HTS::LibHTS
#bam_mods_at_qpos HTS::LibHTS
#bam_mplp64_auto HTS::LibHTS
#bam_mplp_auto HTS::LibHTS
#bam_mplp_constructor HTS::LibHTS
#bam_mplp_destroy HTS::LibHTS
#bam_mplp_destructor HTS::LibHTS
#bam_mplp_init HTS::LibHTS
#bam_mplp_init_overlaps HTS::LibHTS
#bam_mplp_reset HTS::LibHTS
#bam_mplp_set_maxcnt HTS::LibHTS
#bam_next_basemod HTS::LibHTS
#bam_parse_basemod HTS::LibHTS
#bam_parse_cigar HTS::LibHTS
#bam_plp64_auto HTS::LibHTS
#bam_plp64_next HTS::LibHTS
#bam_plp_auto HTS::LibHTS
#bam_plp_constructor HTS::LibHTS
#bam_plp_destroy HTS::LibHTS
#bam_plp_destructor HTS::LibHTS
#bam_plp_init HTS::LibHTS
#bam_plp_insertion HTS::LibHTS
#bam_plp_insertion_mod HTS::LibHTS
#bam_plp_next HTS::LibHTS
#bam_plp_push HTS::LibHTS
#bam_plp_reset HTS::LibHTS
#bam_plp_set_maxcnt HTS::LibHTS
#bam_read1 HTS::LibHTS
bam_seqi HTS::LibHTS
#bam_set1 HTS::LibHTS
#bam_set_qname HTS::LibHTS
#bam_str2flag HTS::LibHTS
#bam_write1 HTS::LibHTS
#base HTS::Bam::Record
#base_qual HTS::Bam::Record
#bcf_add_filter HTS::LibHTS
#bcf_add_id HTS::LibHTS
bcf_alleles2gt HTS::LibHTS
#bcf_clear HTS::LibHTS
#bcf_copy HTS::LibHTS
#bcf_destroy HTS::LibHTS
#bcf_dup HTS::LibHTS
#bcf_empty HTS::LibHTS
#bcf_enc_vchar HTS::LibHTS
#bcf_enc_vfloat HTS::LibHTS
#bcf_enc_vint HTS::LibHTS
#bcf_fmt_array HTS::LibHTS
#bcf_fmt_sized_array HTS::LibHTS
#bcf_get_fmt HTS::LibHTS
#bcf_get_fmt_id HTS::LibHTS
bcf_get_format_char HTS::LibHTS
bcf_get_format_float HTS::LibHTS
bcf_get_format_int32 HTS::LibHTS
#bcf_get_format_string HTS::LibHTS
#bcf_get_format_values HTS::LibHTS
bcf_get_genotypes HTS::LibHTS
#bcf_get_info HTS::LibHTS
bcf_get_info_flag HTS::LibHTS
bcf_get_info_float HTS::LibHTS
#bcf_get_info_id HTS::LibHTS
bcf_get_info_int32 HTS::LibHTS
bcf_get_info_string HTS::LibHTS
#bcf_get_info_values HTS::LibHTS
#bcf_get_variant_type HTS::LibHTS
#bcf_get_variant_types HTS::LibHTS
bcf_gt_allele HTS::LibHTS
bcf_gt_is_missing HTS::LibHTS
bcf_gt_is_phased HTS::LibHTS
bcf_gt_missing HTS::LibHTS
bcf_gt_phased HTS::LibHTS
bcf_gt_unphased HTS::LibHTS
#bcf_has_filter HTS::LibHTS
#bcf_hdr_add_hrec HTS::LibHTS
#bcf_hdr_add_sample HTS::LibHTS
#bcf_hdr_append HTS::LibHTS
#bcf_hdr_destroy HTS::LibHTS
#bcf_hdr_dup HTS::LibHTS
#bcf_hdr_fmt_text HTS::LibHTS
#bcf_hdr_format HTS::LibHTS
#bcf_hdr_get_hrec HTS::LibHTS
#bcf_hdr_get_version HTS::LibHTS
bcf_hdr_id2coltype HTS::LibHTS
#bcf_hdr_id2int HTS::LibHTS
bcf_hdr_id2length HTS::LibHTS
bcf_hdr_id2name HTS::LibHTS
bcf_hdr_id2number HTS::LibHTS
bcf_hdr_id2type HTS::LibHTS
#bcf_hdr_init HTS::LibHTS
bcf_hdr_int2id HTS::LibHTS
#bcf_hdr_merge HTS::LibHTS
bcf_hdr_name2id HTS::LibHTS
bcf_hdr_nsamples HTS::LibHTS
#bcf_hdr_parse HTS::LibHTS
#bcf_hdr_parse_line HTS::LibHTS
#bcf_hdr_printf HTS::LibHTS
#bcf_hdr_read HTS::LibHTS
#bcf_hdr_remove HTS::LibHTS
#bcf_hdr_seqnames HTS::LibHTS
#bcf_hdr_set HTS::LibHTS
#bcf_hdr_set_samples HTS::LibHTS
#bcf_hdr_set_version HTS::LibHTS
#bcf_hdr_subset HTS::LibHTS
#bcf_hdr_sync HTS::LibHTS
#bcf_hdr_write HTS::LibHTS
#bcf_hrec_add_key HTS::LibHTS
#bcf_hrec_destroy HTS::LibHTS
#bcf_hrec_dup HTS::LibHTS
#bcf_hrec_find_key HTS::LibHTS
#bcf_hrec_format HTS::LibHTS
#bcf_hrec_set_val HTS::LibHTS
#bcf_idx_init HTS::LibHTS
#bcf_idx_save HTS::LibHTS
#bcf_index_build HTS::LibHTS
#bcf_index_build2 HTS::LibHTS
#bcf_index_build3 HTS::LibHTS
#bcf_index_load2 HTS::LibHTS
#bcf_index_load3 HTS::LibHTS
#bcf_init HTS::LibHTS
#bcf_is_snp HTS::LibHTS
#bcf_read HTS::LibHTS
#bcf_readrec HTS::LibHTS
#bcf_remove_filter HTS::LibHTS
#bcf_subset HTS::LibHTS
#bcf_subset_format HTS::LibHTS
#bcf_translate HTS::LibHTS
#bcf_unpack HTS::LibHTS
#bcf_update_alleles HTS::LibHTS
#bcf_update_alleles_str HTS::LibHTS
#bcf_update_filter HTS::LibHTS
#bcf_update_format HTS::LibHTS
bcf_update_format_char HTS::LibHTS
bcf_update_format_float HTS::LibHTS
bcf_update_format_int32 HTS::LibHTS
#bcf_update_format_string HTS::LibHTS
bcf_update_genotypes HTS::LibHTS
#bcf_update_id HTS::LibHTS
#bcf_update_info HTS::LibHTS
bcf_update_info_flag HTS::LibHTS
bcf_update_info_float HTS::LibHTS
bcf_update_info_int32 HTS::LibHTS
bcf_update_info_string HTS::LibHTS
#bcf_write HTS::LibHTS
#bgzf_block_write HTS::LibHTS
#bgzf_check_EOF HTS::LibHTS
#bgzf_close HTS::LibHTS
#bgzf_compress HTS::LibHTS
#bgzf_compression HTS::LibHTS
#bgzf_dopen HTS::LibHTS
#bgzf_flush HTS::LibHTS
#bgzf_flush_try HTS::LibHTS
#bgzf_getc HTS::LibHTS
#bgzf_getline HTS::LibHTS
#bgzf_hopen HTS::LibHTS
#bgzf_index_build_init HTS::LibHTS
#bgzf_index_dump HTS::LibHTS
#bgzf_index_dump_hfile HTS::LibHTS
#bgzf_index_load HTS::LibHTS
#bgzf_index_load_hfile HTS::LibHTS
#bgzf_is_bgzf HTS::LibHTS
#bgzf_mt HTS::LibHTS
#bgzf_open HTS::LibHTS
#bgzf_peek HTS::LibHTS
#bgzf_raw_read HTS::LibHTS
#bgzf_raw_write HTS::LibHTS
#bgzf_read HTS::LibHTS
#bgzf_read_block HTS::LibHTS
#bgzf_seek HTS::LibHTS
#bgzf_set_cache_size HTS::LibHTS
bgzf_tell HTS::LibHTS
#bgzf_thread_pool HTS::LibHTS
#bgzf_useek HTS::LibHTS
#bgzf_utell HTS::LibHTS
#bgzf_write HTS::LibHTS
#bin HTS::Bam::Record
#bin= HTS::Bam::Record
#chrom HTS::Bam::Record
#chrom HTS::Bcf
#chrom HTS::Bam
#chrom HTS::Bcf::Record
#chrom_size HTS::Faidx
#cigar HTS::Bam::Record
#cigar HTS::Bam
#clear_id HTS::Bcf::Record
#close HTS::Faidx
#close HTS::Hts
#close HTS::Bam
#closed? HTS::Hts
#cram_block_append HTS::LibHTS
#cram_block_get_comp_size HTS::LibHTS
#cram_block_get_content_id HTS::LibHTS
#cram_block_get_content_type HTS::LibHTS
#cram_block_get_crc32 HTS::LibHTS
#cram_block_get_data HTS::LibHTS
#cram_block_get_offset HTS::LibHTS
#cram_block_get_uncomp_size HTS::LibHTS
#cram_block_set_comp_size HTS::LibHTS
#cram_block_set_content_id HTS::LibHTS
#cram_block_set_crc32 HTS::LibHTS
#cram_block_set_data HTS::LibHTS
#cram_block_set_offset HTS::LibHTS
#cram_block_set_uncomp_size HTS::LibHTS
#cram_block_size HTS::LibHTS
#cram_block_update_size HTS::LibHTS
#cram_check_EOF HTS::LibHTS
#cram_close HTS::LibHTS
#cram_compress_block HTS::LibHTS
#cram_container_get_landmarks HTS::LibHTS
#cram_container_get_length HTS::LibHTS
#cram_container_get_num_blocks HTS::LibHTS
#cram_container_is_empty HTS::LibHTS
#cram_container_set_landmarks HTS::LibHTS
#cram_container_set_length HTS::LibHTS
#cram_container_set_num_blocks HTS::LibHTS
#cram_container_size HTS::LibHTS
#cram_copy_slice HTS::LibHTS
#cram_dopen HTS::LibHTS
#cram_eof HTS::LibHTS
#cram_fd_get_fp HTS::LibHTS
#cram_fd_get_header HTS::LibHTS
#cram_fd_get_version HTS::LibHTS
#cram_fd_set_fp HTS::LibHTS
#cram_fd_set_header HTS::LibHTS
#cram_fd_set_version HTS::LibHTS
#cram_flush HTS::LibHTS
#cram_free_block HTS::LibHTS
#cram_free_container HTS::LibHTS
#cram_get_refs HTS::LibHTS
#cram_major_vers HTS::LibHTS
#cram_minor_vers HTS::LibHTS
#cram_new_block HTS::LibHTS
#cram_new_container HTS::LibHTS
#cram_open HTS::LibHTS
#cram_read_block HTS::LibHTS
#cram_read_container HTS::LibHTS
#cram_seek HTS::LibHTS
#cram_set_header HTS::LibHTS
#cram_set_option HTS::LibHTS
#cram_set_voption HTS::LibHTS
#cram_store_container HTS::LibHTS
#cram_transcode_rg HTS::LibHTS
#cram_uncompress_block HTS::LibHTS
#cram_write_block HTS::LibHTS
#cram_write_container HTS::LibHTS
#create_index HTS::Bcf
#create_index HTS::Bam
#each HTS::Bam::Cigar
#each HTS::Bcf
#each HTS::Bam
#each_alt HTS::Bcf
#each_aux HTS::Bam
#each_chrom HTS::Bcf
#each_chrom HTS::Bam
#each_cigar HTS::Bam
#each_endpos HTS::Bcf
#each_filter HTS::Bcf
#each_flag HTS::Bam
#each_format HTS::Bcf
#each_id HTS::Bcf
#each_info HTS::Bcf
#each_insert_size HTS::Bam
#each_mapq HTS::Bam
#each_mate_chrom HTS::Bam
#each_mate_pos HTS::Bam
#each_pos HTS::Bcf
#each_pos HTS::Bam
#each_qname HTS::Bam
#each_qual HTS::Bcf
#each_qual HTS::Bam
#each_ref HTS::Bcf
#each_seq HTS::Bam
#endpos HTS::Bcf::Record
#endpos HTS::Bam::Record
#endpos HTS::Bcf
#errmod_cal HTS::LibHTS
#errmod_destroy HTS::LibHTS
#errmod_init HTS::LibHTS
#fai_build HTS::LibHTS
#fai_build3 HTS::LibHTS
#fai_destroy HTS::LibHTS
#fai_fetch HTS::LibHTS
#fai_fetch64 HTS::LibHTS
#fai_fetchqual HTS::LibHTS
#fai_fetchqual64 HTS::LibHTS
#fai_load HTS::LibHTS
#fai_load3 HTS::LibHTS
#fai_load3_format HTS::LibHTS
#fai_load_format HTS::LibHTS
#fai_parse_region HTS::LibHTS
#fai_path HTS::LibHTS
#fai_set_cache_size HTS::LibHTS
#faidx_fetch_nseq HTS::LibHTS
#faidx_fetch_qual HTS::LibHTS
#faidx_fetch_qual64 HTS::LibHTS
#faidx_fetch_seq HTS::LibHTS
#faidx_fetch_seq64 HTS::LibHTS
#faidx_has_seq HTS::LibHTS
#faidx_iseq HTS::LibHTS
#faidx_nseq HTS::LibHTS
#faidx_seq_len HTS::LibHTS
#fields HTS::Bcf::Format
#fields HTS::Bcf::Info
#file_format HTS::Hts
#file_format_version HTS::Hts
#file_name HTS::Faidx
#file_name HTS::Tbx
#file_name HTS::Bcf
#file_name HTS::Bam
#filter HTS::Bcf::Record
#filter HTS::Bcf
#flag HTS::Bam::Record
#flag HTS::Bam
#flag= HTS::Bam::Record
#format HTS::Bcf::Record
#format HTS::Bcf
#get HTS::Bcf::Format
#get HTS::Bcf::Info
#get HTS::Bam::Aux
#get_flag HTS::Bcf::Format
#get_flag HTS::Bcf::Info
#get_float HTS::Bcf::Format
#get_float HTS::Bcf::Info
#get_int HTS::Bcf::Format
#get_int HTS::Bcf::Info
#get_string HTS::Bcf::Format
#get_string HTS::Bcf::Info
#get_version HTS::Bcf::Header
#haddextension HTS::LibHTS
#has_flag? HTS::Bam::Flag
#hclose HTS::LibHTS
#hclose_abruptly HTS::LibHTS
#hdopen HTS::LibHTS
#header HTS::Bcf::Record
#header HTS::Bam::Record
#header HTS::Bcf
#header HTS::Bam
#hfile_has_plugin HTS::LibHTS
#hfile_list_plugins HTS::LibHTS
#hfile_list_schemes HTS::LibHTS
#hfile_mem_get_buffer HTS::LibHTS
#hfile_mem_steal_buffer HTS::LibHTS
#hflush HTS::LibHTS
#hgetdelim HTS::LibHTS
#hgets HTS::LibHTS
#hisremote HTS::LibHTS
#hopen HTS::LibHTS
#hpeek HTS::LibHTS
#hrec_add_idx HTS::LibHTS
#hseek HTS::LibHTS
htell HTS::LibHTS
#hts_base_mod_state_alloc HTS::LibHTS
#hts_base_mod_state_free HTS::LibHTS
#hts_check_EOF HTS::LibHTS
#hts_close HTS::LibHTS
#hts_detect_format HTS::LibHTS
#hts_detect_format2 HTS::LibHTS
#hts_feature_string HTS::LibHTS
#hts_features HTS::LibHTS
#hts_flush HTS::LibHTS
#hts_format_description HTS::LibHTS
#hts_format_file_extension HTS::LibHTS
#hts_free HTS::LibHTS
#hts_get_bgzfp HTS::LibHTS
#hts_get_format HTS::LibHTS
#hts_get_log_level HTS::LibHTS
#hts_getline HTS::LibHTS
#hts_hopen HTS::LibHTS
#hts_idx_destroy HTS::LibHTS
#hts_idx_finish HTS::LibHTS
#hts_idx_fmt HTS::LibHTS
#hts_idx_get_meta HTS::LibHTS
#hts_idx_get_n_no_coor HTS::LibHTS
#hts_idx_get_stat HTS::LibHTS
#hts_idx_init HTS::LibHTS
#hts_idx_load HTS::LibHTS
#hts_idx_load2 HTS::LibHTS
#hts_idx_load3 HTS::LibHTS
#hts_idx_nseq HTS::LibHTS
#hts_idx_push HTS::LibHTS
#hts_idx_save HTS::LibHTS
#hts_idx_save_as HTS::LibHTS
#hts_idx_seqnames HTS::LibHTS
#hts_idx_set_meta HTS::LibHTS
#hts_idx_tbi_name HTS::LibHTS
#hts_itr_destroy HTS::LibHTS
#hts_itr_multi_bam HTS::LibHTS
#hts_itr_multi_cram HTS::LibHTS
#hts_itr_multi_next HTS::LibHTS
#hts_itr_next HTS::LibHTS
#hts_itr_query HTS::LibHTS
#hts_itr_querys HTS::LibHTS
#hts_itr_regions HTS::LibHTS
#hts_lib_shutdown HTS::LibHTS
#hts_md5_destroy HTS::LibHTS
#hts_md5_final HTS::LibHTS
#hts_md5_hex HTS::LibHTS
#hts_md5_init HTS::LibHTS
#hts_md5_reset HTS::LibHTS
#hts_md5_update HTS::LibHTS
#hts_open HTS::LibHTS
#hts_open_format HTS::LibHTS
#hts_opt_add HTS::LibHTS
#hts_opt_apply HTS::LibHTS
#hts_opt_free HTS::LibHTS
#hts_parse_decimal HTS::LibHTS
#hts_parse_format HTS::LibHTS
#hts_parse_opt_list HTS::LibHTS
#hts_parse_reg HTS::LibHTS
#hts_parse_reg64 HTS::LibHTS
#hts_parse_region HTS::LibHTS
#hts_readlines HTS::LibHTS
#hts_readlist HTS::LibHTS
#hts_reglist_create HTS::LibHTS
#hts_reglist_free HTS::LibHTS
#hts_set_cache_size HTS::LibHTS
#hts_set_fai_filename HTS::LibHTS
#hts_set_filter_expression HTS::LibHTS
#hts_set_log_level HTS::LibHTS
#hts_set_opt HTS::LibHTS
#hts_set_thread_pool HTS::LibHTS
#hts_set_threads HTS::LibHTS
#hts_test_feature HTS::LibHTS
#hts_tpool_delete_result HTS::LibHTS
#hts_tpool_destroy HTS::LibHTS
#hts_tpool_dispatch HTS::LibHTS
#hts_tpool_dispatch2 HTS::LibHTS
#hts_tpool_dispatch3 HTS::LibHTS
#hts_tpool_init HTS::LibHTS
#hts_tpool_kill HTS::LibHTS
#hts_tpool_next_result HTS::LibHTS
#hts_tpool_next_result_wait HTS::LibHTS
#hts_tpool_process_attach HTS::LibHTS
#hts_tpool_process_destroy HTS::LibHTS
#hts_tpool_process_detach HTS::LibHTS
#hts_tpool_process_empty HTS::LibHTS
#hts_tpool_process_flush HTS::LibHTS
#hts_tpool_process_init HTS::LibHTS
#hts_tpool_process_is_shutdown HTS::LibHTS
#hts_tpool_process_len HTS::LibHTS
#hts_tpool_process_qsize HTS::LibHTS
#hts_tpool_process_ref_decr HTS::LibHTS
#hts_tpool_process_ref_incr HTS::LibHTS
#hts_tpool_process_reset HTS::LibHTS
#hts_tpool_process_shutdown HTS::LibHTS
#hts_tpool_process_sz HTS::LibHTS
#hts_tpool_result_data HTS::LibHTS
#hts_tpool_size HTS::LibHTS
#hts_tpool_wake_dispatch HTS::LibHTS
#hts_version HTS::LibHTS
#id HTS::Bcf::Record
#id HTS::Bcf
#id= HTS::Bcf::Record
#index_loaded? HTS::Bcf
#index_loaded? HTS::Bam
#index_name HTS::Bcf
#index_name HTS::Bam
#info HTS::Bcf::Record
#info HTS::Bcf
#initialize HTS::Bcf::Record
#initialize HTS::Bcf::Header
#initialize HTS::Bcf::Format
#initialize HTS::Bam::Record
#initialize HTS::Bam::Header
#initialize HTS::Bam::Cigar
#initialize HTS::Bcf::Info
#initialize HTS::Bam::Flag
#initialize HTS::Bam::Aux
#initialize HTS::Tbx
#initialize HTS::Faidx
#initialize HTS::Hts
#initialize HTS::Bcf
#initialize HTS::Bam
#insert_size HTS::Bam::Record
#insert_size HTS::Bam
#insert_size= HTS::Bam::Record
#int32_put_blk HTS::LibHTS
#kf_betai HTS::LibHTS
#kf_erfc HTS::LibHTS
#kf_gammap HTS::LibHTS
#kf_gammaq HTS::LibHTS
#kf_lgamma HTS::LibHTS
#kt_fisher_exact HTS::LibHTS
#len HTS::Bam::Record
#length HTS::Bcf::Format
#length HTS::Bcf::Info
#length HTS::Faidx
lib_path HTS
#load_index HTS::Bcf
#load_index HTS::Bam
#mapq HTS::Bam::Record
#mapq HTS::Bam
#mapq= HTS::Bam::Record
#mate_chrom HTS::Bam::Record
#mate_chrom HTS::Bam
#mate_pos HTS::Bam::Record
#mate_pos HTS::Bam
#mate_pos= HTS::Bam::Record
#mode HTS::Bcf
#mode HTS::Bam
#mtid HTS::Bam::Record
#mtid= HTS::Bam::Record
#nsamples HTS::Bcf::Header
#nsamples HTS::Bcf
open HTS::Faidx
open HTS::Tbx
open HTS::Bcf
open HTS::Bam
#pos HTS::Bcf::Record
#pos HTS::Bam::Record
#pos HTS::Bcf
#pos HTS::Bam
#pos= HTS::Bcf::Record
#pos= HTS::Bam::Record
#probaln_glocal HTS::LibHTS
#qlen HTS::Bam::Record
#qname HTS::Bam::Record
#qname HTS::Bam
#qual HTS::Bcf::Record
#qual HTS::Bam::Record
#qual HTS::Bcf
#qual HTS::Bam
#qual= HTS::Bcf::Record
#query HTS::Bam
#read_array_of_struct FFI::Pointer
#ref HTS::Bcf::Record
#ref HTS::Bcf
release HTS::LibHTS::Bcf1
release HTS::LibHTS::Bam1
#rewind HTS::Hts
#rid HTS::Bcf::Record
#rid= HTS::Bcf::Record
#rlen HTS::Bam::Record
#sam_cap_mapq HTS::LibHTS
#sam_format1 HTS::LibHTS
#sam_hdr_add_line HTS::LibHTS
#sam_hdr_add_lines HTS::LibHTS
#sam_hdr_add_pg HTS::LibHTS
#sam_hdr_change_HD HTS::LibHTS
#sam_hdr_count_lines HTS::LibHTS
#sam_hdr_destroy HTS::LibHTS
#sam_hdr_dup HTS::LibHTS
#sam_hdr_find_line_id HTS::LibHTS
#sam_hdr_find_line_pos HTS::LibHTS
#sam_hdr_find_tag_id HTS::LibHTS
#sam_hdr_find_tag_pos HTS::LibHTS
#sam_hdr_incr_ref HTS::LibHTS
#sam_hdr_init HTS::LibHTS
#sam_hdr_length HTS::LibHTS
#sam_hdr_line_index HTS::LibHTS
#sam_hdr_line_name HTS::LibHTS
#sam_hdr_name2tid HTS::LibHTS
#sam_hdr_nref HTS::LibHTS
#sam_hdr_parse HTS::LibHTS
#sam_hdr_pg_id HTS::LibHTS
#sam_hdr_read HTS::LibHTS
#sam_hdr_remove_except HTS::LibHTS
#sam_hdr_remove_line_id HTS::LibHTS
#sam_hdr_remove_line_pos HTS::LibHTS
#sam_hdr_remove_lines HTS::LibHTS
#sam_hdr_remove_tag_id HTS::LibHTS
#sam_hdr_str HTS::LibHTS
#sam_hdr_tid2len HTS::LibHTS
#sam_hdr_tid2name HTS::LibHTS
#sam_hdr_update_line HTS::LibHTS
#sam_hdr_write HTS::LibHTS
#sam_idx_init HTS::LibHTS
#sam_idx_save HTS::LibHTS
#sam_index_build HTS::LibHTS
#sam_index_build2 HTS::LibHTS
#sam_index_build3 HTS::LibHTS
#sam_index_load HTS::LibHTS
#sam_index_load2 HTS::LibHTS
#sam_index_load3 HTS::LibHTS
sam_itr_next HTS::LibHTS
#sam_itr_queryi HTS::LibHTS
#sam_itr_querys HTS::LibHTS
#sam_itr_regarray HTS::LibHTS
#sam_itr_regions HTS::LibHTS
#sam_open_mode HTS::LibHTS
#sam_open_mode_opts HTS::LibHTS
#sam_parse1 HTS::LibHTS
#sam_parse_cigar HTS::LibHTS
#sam_parse_region HTS::LibHTS
#sam_passes_filter HTS::LibHTS
#sam_prob_realn HTS::LibHTS
#sam_read1 HTS::LibHTS
#sam_write1 HTS::LibHTS
#samples HTS::Bcf
#samples HTS::Bcf::Header
search_htslib HTS
#seek HTS::Hts
#seq HTS::Bam::Record
#seq HTS::Bam
#set_threads HTS::Hts
#size HTS::Bcf::Format
#size HTS::Bcf::Info
#strand HTS::Bam::Record
#stringify_argv HTS::LibHTS
#struct HTS::Bcf::Record
#struct HTS::Bcf::Header
#struct HTS::Bam::Record
#struct HTS::Bam::Header
#struct HTS::Hts
#struct HTS::Faidx
struct_layout FFI::Struct
#target_count HTS::Bam::Header
#target_len HTS::Bam::Header
#target_names HTS::Bam::Header
#tbx_destroy HTS::LibHTS
#tbx_index HTS::LibHTS
#tbx_index_build HTS::LibHTS
#tbx_index_build2 HTS::LibHTS
#tbx_index_build3 HTS::LibHTS
#tbx_index_load HTS::LibHTS
#tbx_index_load2 HTS::LibHTS
#tbx_index_load3 HTS::LibHTS
#tbx_name2id HTS::LibHTS
#tbx_readrec HTS::LibHTS
#tbx_seqnames HTS::LibHTS
#tell HTS::Hts
#tid HTS::Bam::Record
#tid= HTS::Bam::Record
#to_h HTS::Bcf::Format
#to_h HTS::Bcf::Info
#to_i HTS::Bam::Flag
#to_ptr HTS::Bcf::Record
#to_ptr HTS::Bcf::Header
#to_ptr HTS::Bam::Record
#to_ptr HTS::Bam::Header
#to_ptr HTS::Hts
#to_s HTS::Bcf::Record
#to_s HTS::Bcf::Header
#to_s HTS::Bam::Record
#to_s HTS::Bam::Header
#to_s HTS::Bam::Cigar
#to_s HTS::Bam::Flag
union_layout FFI::Struct
#value HTS::Bam::Flag
#vcf_format HTS::LibHTS
#vcf_hdr_read HTS::LibHTS
#vcf_hdr_write HTS::LibHTS
#vcf_open_mode HTS::LibHTS
#vcf_parse HTS::LibHTS
#vcf_read HTS::LibHTS
#vcf_write HTS::LibHTS
#vcf_write_line HTS::LibHTS
#write HTS::Bcf
#write HTS::Bam
#write_header HTS::Bcf
#write_header HTS::Bam