Method List
Search:
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#<=> MTree::Tree
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#aboutToSend MTask::Task
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#best TreeScore
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bootMPI MRunEnv::MPIRunner
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#buildPairs Ncd
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checkHost MRunEnv::SSHAgent
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#clone MTree::Tree
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#compress Ncd
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#connect MTree::Tree
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#connected? MTree::Tree
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convertToString DistMatrix
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#copyEdges MTree::Tree
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defaultCompressor FoundComp
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dirsInDir MRunEnv::RunEnv
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#disconnect MTree::Tree
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doMasterInit TaskMaster
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doSlaveLoop TaskMaster
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#edges MTree::Tree
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enqueue TaskMaster
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#execute MTask::Task
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#execute MTree::TreeTask
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#execute CompressionTask
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#fetch MTask::Task
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fetch TaskMaster
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filesInDir MRunEnv::RunEnv
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#findInputFile CLConfig
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#findPath MTree::Tree
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fromFile CompressionObject
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fromString CompressionObject
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getDefaultConfig CLConfig
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#getFilelistFromDirOrFile CLConfig
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getFreeSlave TaskMaster
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getGoodHostsFile MRunEnv::MPIRunner
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#getKernelCount MTree::Tree
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#getNeighborCount MTree::Tree
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#getNeighbors MTree::Tree
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#getNodeCount MTree::Tree
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#getSpeciesCount MTree::Tree
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getTemporaryFilename MRunEnv::RunEnv
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getTemporaryFilenames MRunEnv::RunEnv
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#gzipCompress Top Level Namespace
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haltMPI MRunEnv::MPIRunner
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handleReply TaskMaster
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helperHosts MRunEnv::SSHAgent
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#idTotal CompressionTask
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init TaskMaster
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#initialize MTree::Tree
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#initialize MTree::TreeTask
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#initialize MTask::Store
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#initialize CompressionTask
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#initialize CLConfig
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#initialize Ncd
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#initialize CompressionObject
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#isKernel? MTree::Tree
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isRunning? MRunEnv::SSHAgent
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#isSpecies? MTree::Tree
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#key MTask::Store
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lamRunning? MRunEnv::MPIRunner
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liveHosts MRunEnv::SSHAgent
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makeBestList TreeScore
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makeFullList TreeScore
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#makeName MTree::Tree
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#mutateComplex MTree::Tree
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#mutateRandom MTree::Tree
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#mutateSpecies MTree::Tree
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#mutateSubtreeInterchange MTree::Tree
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#mutateSubtreeTransfer MTree::Tree
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#ncd Ncd
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#ncdFile Ncd
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#ncdMatrix Ncd
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#ncdMatrixFile Ncd
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#ncdMatrixString Ncd
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#ncdSingle Ncd
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#ncdString Ncd
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#ncdVector Ncd
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#ncdVectorFile Ncd
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#ncdVectorString Ncd
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outputDir MRunEnv::DirNames
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#parseValue CLConfig
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#penalty TreeScore
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#penalty= TreeScore
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primaryHost MRunEnv::SSHAgent
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printVersionAndExit CLConfig
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#randomKernelNode MTree::Tree
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#randomKernelNodes MTree::Tree
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#randomNeighbor MTree::Tree
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#randomNode MTree::Tree
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#randomNodes MTree::Tree
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#randomSpeciesNode MTree::Tree
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#randomSpeciesNodes MTree::Tree
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randomTree MTree::Tree
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#readCLConfig CLConfig
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#readFileList CLConfig
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readFromFile DistMatrix
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#readTaggedFileList CLConfig
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rebootMPI MRunEnv::MPIRunner
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#reply MTask::Task
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reply TaskMaster
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runAt MRunEnv::SSHAgent
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runEverywhere MRunEnv::SSHAgent
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runMPIRubyScript MRunEnv::MPIRunner
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#score TreeScore
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#sentTime MTask::Task
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setDefaultConfig CLConfig
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setSingleUser CLConfig
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#setTid MTask::Task
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singleUser? CLConfig
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stopMPIRubyScript MRunEnv::MPIRunner
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storeEverywhere TaskMaster
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#tid MTask::Task
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#toDotString MTree::Tree
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#to_s CompressionObject
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#to_s MTree::Tree
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#val MTask::Store
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#value CompressionObject
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#verifyTree MTree::Tree
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waitForReply TaskMaster
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waitForSlave TaskMaster
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#worst TreeScore
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writeDefaultConfigFile CLConfig
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writeGoodHostFile MRunEnv::SSHAgent
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zrand MRunEnv::RunEnv