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#al Bio::DB::Alignment
#average_coverage Bio::DB::Sam
bam_sort Bio::DB::SAM::Tools
#calend Bio::DB::Alignment
#chromosome_coverage Bio::DB::Sam
#cigar Bio::DB::Alignment
#close Bio::DB::Sam
#failed_quality Bio::DB::Alignment
#fetch Bio::DB::Sam
#fetch_reference Bio::DB::Sam
#fetch_with_function Bio::DB::Sam
filename Bio::DB::SAM::Library
finalize Bio::DB::Alignment
finalize Bio::DB::Sam
#first_in_pair Bio::DB::Alignment
#flag Bio::DB::Alignment
#initialize Bio::DB::Alignment
#initialize Bio::DB::Sam
#initialize Bio::DB::SAMException
#is_duplicate Bio::DB::Alignment
#is_mapped Bio::DB::Alignment
#is_paired Bio::DB::Alignment
#isize Bio::DB::Alignment
#load_index Bio::DB::Sam
#load_reference Bio::DB::Sam
#mapq Bio::DB::Alignment
#mate_strand Bio::DB::Alignment
#mate_unmapped Bio::DB::Alignment
#mpos Bio::DB::Alignment
#mrnm Bio::DB::Alignment
#open Bio::DB::Sam
#pos Bio::DB::Alignment
#primary Bio::DB::Alignment
#qlen Bio::DB::Alignment
#qname Bio::DB::Alignment
#qname Bio::DB::SAM::Tools::Bam1T
#qual Bio::DB::Alignment
#query_strand Bio::DB::Alignment
#query_string Bio::DB::Sam
#query_unmapped Bio::DB::Alignment
#rname Bio::DB::Alignment
#sam= Bio::DB::Alignment
#sam_file Bio::DB::Sam
#samstr Bio::DB::Alignment
#second_in_pair Bio::DB::Alignment
#seq Bio::DB::Alignment
#set Bio::DB::Tag
#set Bio::DB::Alignment
#tag Bio::DB::Tag
#tags Bio::DB::Alignment
#text Bio::DB::SAM::Tools::BamHeaderT
#text= Bio::DB::SAM::Tools::BamHeaderT
#to_s Bio::DB::Sam
#type Bio::DB::Tag
#value Bio::DB::Tag