Method List
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#<=> Bio::GFFbrowser::Helpers::Section
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#[] LRUHash
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#[] Bio::GFF::FastaReader
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#[] Bio::GFFbrowser::Digest::NoCacheHelpers::SeekRecList
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#[]= Bio::GFFbrowser::Digest::NoCacheHelpers::SeekRecList
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#add Bio::GFFbrowser::Helpers::LinkedRecs
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#add Bio::GFFbrowser::Digest::NoCacheHelpers::SeekLinkedRecs
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#add Bio::GFFbrowser::Helpers::Counter
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#assemble Bio::GFFbrowser::Helpers::Gff3Sequence
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#assembleAA Bio::GFFbrowser::Helpers::Gff3Sequence
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#assembler Bio::GFFbrowser::GFFdb
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#assoc LRUHash
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#clear LRUHash
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#default LRUHash
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#default_proc LRUHash
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#delete LRUHash
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#delete_if LRUHash
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#description Bio::GFFbrowser::Helpers::Gff3Sequence
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#each Bio::GFF::FastaReader
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#each Bio::GFFbrowser::Digest::NoCacheHelpers::SeekRecList
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#each_CDS Bio::GFFbrowser::Digest::Parser
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#each_CDS_seq Bio::GFFbrowser::Digest::Parser
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#each_exon Bio::GFFbrowser::Digest::Parser
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#each_exon_seq Bio::GFFbrowser::Digest::Parser
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#each_item Bio::GFFbrowser::Digest::InMemory
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#each_item Bio::GFFbrowser::Digest::NoCache
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#each_key LRUHash
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#each_mRNA Bio::GFFbrowser::Digest::Parser
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#each_mRNA_seq Bio::GFFbrowser::Digest::Parser
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#each_pair LRUHash
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#each_rec Bio::GFF::GFF3::FileIterator
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#each_sequence Bio::GFF::GFF3::FileIterator
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#each_value LRUHash
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#empty? LRUHash
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#error Bio::GFFbrowser::Helpers::Error
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#fasta_io_seek Bio::GFF::GFF3::FileIterator
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#fetch LRUHash
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fetch Bio::GFFbrowser::Digest::NoCacheHelpers::SeekRec
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#fh Bio::GFF::GFF3::FileIterator
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#find_component Bio::GFFbrowser::Helpers::Gff3Component
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formatID Bio::GFFbrowser::Helpers::Record
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#has_key? LRUHash
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#has_value? LRUHash
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#info Bio::GFFbrowser::Helpers::Error
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#initialize Bio::GFF::GFF3::FileIterator
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#initialize Bio::GFFbrowser::Digest::InMemory
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#initialize Bio::GFFbrowser::Digest::NoCache
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#initialize Bio::GFF::FastaReader
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#initialize Bio::GFFbrowser::Helpers::Section
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#initialize LRUHash
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#initialize Bio::GFFbrowser::GFFdb
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#initialize Bio::GFFbrowser::FastaWriter
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#initialize Bio::GFF::GFF3::FileRecord
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#initialize Bio::GFFbrowser::Digest::NoCacheHelpers::SeekRecList
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#insert_after LRUHash::Node
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#intersection Bio::GFFbrowser::Helpers::Section
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#io_seek Bio::GFF::GFF3::FileRecord
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#key LRUHash::Node
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#key LRUHash
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#keys LRUHash
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#max_size LRUHash
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#parse Bio::GFF::FastaReader
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#parse Bio::GFFbrowser::Digest::InMemory
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#parse Bio::GFFbrowser::Digest::NoCache
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#pred LRUHash::Node
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#put Bio::GFFbrowser::FastaWriter
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#rassoc LRUHash
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#read_fasta Bio::GFFbrowser::Digest::Parser
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#rec Bio::GFFbrowser::Helpers::Section
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#release_proc LRUHash
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#sequencelist Bio::GFFbrowser::Digest::InMemory
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#show_unrecognized_features Bio::GFFbrowser::Digest::Parser
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#size LRUHash
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sort Bio::GFFbrowser::Helpers::Sections
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#store LRUHash
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#store_record Bio::GFFbrowser::Digest::Parser
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#succ LRUHash::Node
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#to_s LRUHash
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#unlink LRUHash::Node
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#validate_cdss Bio::GFFbrowser::Digest::Parser
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#validate_mrnas Bio::GFFbrowser::Digest::Parser
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#validate_nonoverlapping Bio::GFFbrowser::Digest::NoCacheHelpers::SeekLinkedRecs
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#validate_nonoverlapping Bio::GFFbrowser::Helpers::LinkedRecs
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#validate_seqname Bio::GFFbrowser::Helpers::LinkedRecs
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#validate_seqname Bio::GFFbrowser::Digest::NoCacheHelpers::SeekLinkedRecs
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#validate_shared_parent Bio::GFFbrowser::Digest::NoCacheHelpers::SeekLinkedRecs
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#validate_shared_parent Bio::GFFbrowser::Helpers::LinkedRecs
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#value LRUHash::Node
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#values LRUHash
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#values_at LRUHash
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#warn Bio::GFFbrowser::Helpers::Error