Method List

Classes Methods Files

Search:

#== Node
#== Network
#add_absolute_rank_column Ranker
#add_edge Network
#add_edge2hash Network
#add_node Network
#adjacency_matrices Network
#array2hash Ranker
#association_values Network
#bfs_shortest_path Network
#build_edges_from_adjacency_matrix Network
#build_nodes_from_adjacency_matrix Network
#build_path Network
#clean_autorelations_on_association_values Network
#clone Node
#clone Network
#collect_nodes Network
#communities_avg_sht_path Network
#communities_comparative_degree Network
#compute_adjusted_pvalue Network
#compute_adjusted_pvalue_benjaminiHochberg Network
#compute_adjusted_pvalue_bonferroni Network
#compute_autorelations Network
#compute_avg_sht_path Network
#compute_comparative_degree Network
#compute_group_metrics Network
#compute_log_transformation Network
#compute_node_com_assoc Network
#compute_node_com_assoc_in_precomputed_communities Network
#compute_pairs Network
#control_connections Network
#cyt_app_add_edges Net_plotter
#cyt_app_add_node Net_plotter
#delete_nodes Network
#do_ranking Ranker
#edges Network
#expand_clusters Network
#generate_adjacency_matrix Network
#get_all_intersections Network
#get_all_pairs Network
#get_association_by_transference_resources Network
#get_association_values Network
#get_associations Network
#get_bipartite_subgraph Network
#get_connected_nodes Network
#get_cosine_associations Network
#get_counts_association Network
#get_csi_associations Network
#get_cuts Performancer
#get_degree Network
#get_edge_number Network
#get_geometric_associations Network
#get_hypergeometric_associations Network
#get_hypergeometric_associations_with_topology Network
#get_individual_absolute_rank Ranker
#get_individual_rank Ranker
#get_jaccard_association Network
#get_kernel Network
get_kernel Adv_mat_calc
#get_node_attributes Network
#get_nodes_indexes Ranker
#get_nodes_layer Network
#get_pcc_associations Network
#get_position_for_items_with_same_score Ranker
#get_pred_rec Performancer
#get_reference_ranks Ranker
#get_reliable_labels Performancer
#get_seed_indexes Ranker
#get_seed_leave_one_out Ranker
#get_simpson_association Network
#get_top Ranker
graphWeights Adv_mat_calc
#group_nodes Network
#id Node
#initialize Net_plotter
#initialize Network
#initialize Performancer
#initialize Ranker
#initialize Node
#intersection Network
#kernels Network
#link_ontology Network
load Net_parser
#load_control Performancer
load_network_by_bin_matrix Net_parser
load_network_by_pairs Net_parser
load_network_by_plain_matrix Net_parser
#load_node_groups_from_file Ranker
#load_nodes_by_group Ranker
#load_nodes_from_file Ranker
#load_prediction Performancer
#load_references Ranker
#load_seeds Ranker
#matrix Ranker
#nodes Network
#nodes Ranker
#plot_cyt_app Net_plotter
#plot_dot Net_plotter
#plot_network Network
#pred_rec Performancer
#randomize_bipartite_net_by_links Network
#randomize_bipartite_net_by_nodes Network
#randomize_monopartite_net_by_links Network
#randomize_monopartite_net_by_nodes Network
#randomize_network Network
#rank_by_seed Ranker
#ranking Ranker
#reference_nodes Network
#save_adjacency_matrix Network
#seeds Ranker
#set_compute_pairs Network
#set_layer Network
#shortest_path Network
#threads Network
tranference_resources Adv_mat_calc
#type Node
#write_kernel Network