Class: BiocurationClassification

Inherits:
ApplicationRecord show all
Includes:
Housekeeping, Shared::IsData
Defined in:
app/models/biocuration_classification.rb

Overview

A BiocurationClassification classifies a CollectionObject within a collection into some biologically-related category. See BiocurationClass.

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from Shared::IsData

#errors_excepting, #full_error_messages_excepting, #identical, #is_community?, #is_destroyable?, #is_editable?, #is_in_use?, #is_in_users_projects?, #metamorphosize, #similar

Methods included from Housekeeping

#has_polymorphic_relationship?

Methods inherited from ApplicationRecord

transaction_with_retry

Instance Attribute Details

#biocuration_class_id ⇒ Integer

the biocuration class ID

Returns:

  • (Integer) 


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# File 'app/models/biocuration_classification.rb', line 20

class BiocurationClassification < ApplicationRecord
  include Housekeeping
  include Shared::IsData

  acts_as_list scope: [:biological_collection_object_id, :project_id]

  belongs_to :biocuration_class, inverse_of: :biocuration_classifications
  belongs_to :biological_collection_object, class_name: '::CollectionObject::BiologicalCollectionObject', inverse_of: :biocuration_classifications

  validates_presence_of :biocuration_class, :biological_collection_object
  validates_uniqueness_of :biocuration_class, scope: [:biological_collection_object]

  # Janky, but here for now
  after_save :update_dwc_occurrence
  after_destroy :revert_dwc_occurrence

  protected

  def update_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biological_collection_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'FossilSpecimen')
    end
  end

  def revert_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biological_collection_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'PreservedSpecimen')
    end
  end

end

#biological_collection_object_id ⇒ Integer

the biological collection object ID

Returns:

  • (Integer) 


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# File 'app/models/biocuration_classification.rb', line 20

class BiocurationClassification < ApplicationRecord
  include Housekeeping
  include Shared::IsData

  acts_as_list scope: [:biological_collection_object_id, :project_id]

  belongs_to :biocuration_class, inverse_of: :biocuration_classifications
  belongs_to :biological_collection_object, class_name: '::CollectionObject::BiologicalCollectionObject', inverse_of: :biocuration_classifications

  validates_presence_of :biocuration_class, :biological_collection_object
  validates_uniqueness_of :biocuration_class, scope: [:biological_collection_object]

  # Janky, but here for now
  after_save :update_dwc_occurrence
  after_destroy :revert_dwc_occurrence

  protected

  def update_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biological_collection_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'FossilSpecimen')
    end
  end

  def revert_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biological_collection_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'PreservedSpecimen')
    end
  end

end

#position ⇒ Integer

Returns used with acts_as_list.

Returns:

  • (Integer) —

    used with acts_as_list



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# File 'app/models/biocuration_classification.rb', line 20

class BiocurationClassification < ApplicationRecord
  include Housekeeping
  include Shared::IsData

  acts_as_list scope: [:biological_collection_object_id, :project_id]

  belongs_to :biocuration_class, inverse_of: :biocuration_classifications
  belongs_to :biological_collection_object, class_name: '::CollectionObject::BiologicalCollectionObject', inverse_of: :biocuration_classifications

  validates_presence_of :biocuration_class, :biological_collection_object
  validates_uniqueness_of :biocuration_class, scope: [:biological_collection_object]

  # Janky, but here for now
  after_save :update_dwc_occurrence
  after_destroy :revert_dwc_occurrence

  protected

  def update_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biological_collection_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'FossilSpecimen')
    end
  end

  def revert_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biological_collection_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'PreservedSpecimen')
    end
  end

end

#project_id ⇒ Integer

the project ID

Returns:

  • (Integer) 


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# File 'app/models/biocuration_classification.rb', line 20

class BiocurationClassification < ApplicationRecord
  include Housekeeping
  include Shared::IsData

  acts_as_list scope: [:biological_collection_object_id, :project_id]

  belongs_to :biocuration_class, inverse_of: :biocuration_classifications
  belongs_to :biological_collection_object, class_name: '::CollectionObject::BiologicalCollectionObject', inverse_of: :biocuration_classifications

  validates_presence_of :biocuration_class, :biological_collection_object
  validates_uniqueness_of :biocuration_class, scope: [:biological_collection_object]

  # Janky, but here for now
  after_save :update_dwc_occurrence
  after_destroy :revert_dwc_occurrence

  protected

  def update_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biological_collection_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'FossilSpecimen')
    end
  end

  def revert_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biological_collection_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'PreservedSpecimen')
    end
  end

end

Instance Method Details

#revert_dwc_occurrence ⇒ Object (protected) 



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# File 'app/models/biocuration_classification.rb', line 44

def revert_dwc_occurrence
  if biocuration_class.uri == DWC_FOSSIL_URI
    biological_collection_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'PreservedSpecimen')
  end
end

#update_dwc_occurrence ⇒ Object (protected) 



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# File 'app/models/biocuration_classification.rb', line 38

def update_dwc_occurrence
  if biocuration_class.uri == DWC_FOSSIL_URI
    biological_collection_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'FossilSpecimen')
  end
end