Class: Wrnap::Rna::Loop

Inherits:

Object

• Object
• Wrnap::Rna::Loop

Defined in:

lib/wrnap/rna/motifs.rb

Instance Attribute Summary

• #i ⇒ Object readonly

  Returns the value of attribute i.

• #j ⇒ Object readonly

  Returns the value of attribute j.

Instance Method Summary

• #in(sequence) ⇒ Object
• #initialize(i, j) ⇒ Loop constructor

  A new instance of Loop.

• #inspect ⇒ Object
• #length ⇒ Object
• #name ⇒ Object

Constructor Details

#initialize(i, j) ⇒ Loop

# File 'lib/wrnap/rna/motifs.rb', line 58

def initialize(i, j)
  @i, @j = i, j
end

Instance Attribute Details

#i ⇒ Object (readonly)

Returns the value of attribute i.

# File 'lib/wrnap/rna/motifs.rb', line 56

def i
  @i
end

#j ⇒ Object (readonly)

Returns the value of attribute j.

# File 'lib/wrnap/rna/motifs.rb', line 56

def j
  @j
end

Instance Method Details

#in(sequence) ⇒ Object

# File 'lib/wrnap/rna/motifs.rb', line 62

def in(sequence)
  sequence[i..j]
end

#inspect ⇒ Object

# File 'lib/wrnap/rna/motifs.rb', line 74

def inspect
  "#<Loop: %s>" % name
end

#length ⇒ Object

# File 'lib/wrnap/rna/motifs.rb', line 66

def length
  j - i + 1
end

#name ⇒ Object

# File 'lib/wrnap/rna/motifs.rb', line 70

def name
  "(%d, %d [%d])" % [i, j, length]
end