Module: Wrnap

Defined in:
lib/wrnap/package/mfpt.rb,
lib/wrnap.rb,
lib/wrnap/rna.rb,
lib/wrnap/rna/box.rb,
lib/wrnap/version.rb,
lib/wrnap/rna/tree.rb,
lib/wrnap/graphing/r.rb,
lib/wrnap/rna/motifs.rb,
lib/wrnap/global/yaml.rb,
lib/wrnap/rna/context.rb,
lib/wrnap/rna/wrapper.rb,
lib/wrnap/etl/infernal.rb,
lib/wrnap/package/base.rb,
lib/wrnap/package/eval.rb,
lib/wrnap/package/fold.rb,
lib/wrnap/package/heat.rb,
lib/wrnap/package/plot.rb,
lib/wrnap/package/xbor.rb,
lib/wrnap/rna/metadata.rb,
lib/wrnap/etl/stockholm.rb,
lib/wrnap/global/entrez.rb,
lib/wrnap/global/parser.rb,
lib/wrnap/global/runner.rb,
lib/wrnap/package/varna.rb,
lib/wrnap/global/chainer.rb,
lib/wrnap/package/fft_eq.rb,
lib/wrnap/package/fftbor.rb,
lib/wrnap/package/rnabor.rb,
lib/wrnap/package/subopt.rb,
lib/wrnap/rna/extensions.rb,
lib/wrnap/rna/constraints.rb,
lib/wrnap/package/fft_mfpt.rb,
lib/wrnap/package/fftbor2d.rb,
lib/wrnap/package/spectral.rb,
lib/wrnap/package/kinwalker.rb,
lib/wrnap/package/rna2dfold.rb,
lib/wrnap/package/tabu_path.rb,
lib/wrnap/package/ffthairpin.rb,
lib/wrnap/package/fft_eq_base.rb,
lib/wrnap/package/fftmultiloop.rb,
lib/wrnap/package/energy_grid_2d.rb,
lib/wrnap/package/fft_population.rb,
lib/wrnap/package/fold_constrained.rb

Overview

Maybe add something like flagsets so that common option groups can be combined together. Also, add a rerun feature.

Defined Under Namespace

Modules: Etl, Global, Graphing, Package Classes: Rna

Constant Summary collapse

RT =

kcal / K / mol @ 37C

1e-3 * 1.9872041 * (273.15 + 37)
VERSION = 
"1.2.0"

Class Method Summary collapse

Class Method Details

.debug ⇒ Object 



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# File 'lib/wrnap.rb', line 57

def self.debug
  @debug
end

.debug=(value) ⇒ Object 



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# File 'lib/wrnap.rb', line 61

def self.debug=(value)
  @debug = value
end

.debugger ⇒ Object 



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# File 'lib/wrnap.rb', line 53

def self.debugger
  STDERR.puts yield if Wrnap.debug
end