Module: Transrate

Defined in:

lib/transrate.rb,
lib/transrate/cmd.rb,
lib/transrate/snap.rb,
lib/transrate/contig.rb,
lib/transrate/salmon.rb,
lib/transrate/writer.rb,
lib/transrate/cmdline.rb,
lib/transrate/version.rb,
lib/transrate/assembly.rb,
lib/transrate/transrater.rb,
lib/transrate/read_metrics.rb,
lib/transrate/contig_metrics.rb,
lib/transrate/score_optimiser.rb,
lib/transrate/comparative_metrics.rb,
ext/transrate/transrate.c

Overview

Transrate is a comprehensive transcriptome assembly quality assessment tool.

Defined Under Namespace

Modules: VERSION Classes: Assembly, AssemblyError, Cmd, Cmdline, ComparativeMetrics, Contig, ContigMetrics, ReadMetrics, ReadMetricsError, Salmon, SalmonError, ScoreOptimiser, Snap, SnapError, TransrateArgError, TransrateError, TransrateIOError, Transrater, Writer