Module: Taxa::OpenTreeOfLife::TreeOfLife::Subtree

Included in:
Taxa::OpenTreeOfLife::TreeOfLife
Defined in:
lib/taxa/open_tree_of_life/tree_of_life/subtree.rb

Overview

wrapper around the node_info tree of life endpoint for Open Tree of Life

Instance Method Summary collapse

Instance Method Details

#subtree(**parameters) ⇒ Object 



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# File 'lib/taxa/open_tree_of_life/tree_of_life/subtree.rb', line 10

def subtree(**parameters)
  ott_id = parameters[:ott_id]
  node_id = parameters[:node_id]

  validate_ott_and_node_id(ott_id, node_id)

  format = parameters[:format] || 'newick'
  validate_format(format)

  label_format = get_label_format(format, **parameters)

  height_limit = get_height_limit(format, **parameters)
  payload = { node_id: node_id, ott_id: ott_id, format: format, label_format: label_format,
              height_limit: height_limit }.compact
  url = 'https://api.opentreeoflife.org/v3/tree_of_life/subtree'
  response = @http_client.post(url, JSON.generate(payload), 'Content-Type' => 'application/json')
  JSON.parse(response.body)
end