Module: Sylfy::Service::UniChem::REST

Defined in:
lib/sylfy/service/unichemrest.rb

Constant Summary collapse

NAMEURIMAPPING = 
{
	chembl: "chembl.compound",
	drugbank: "drugbank",
	pdb: "pdb",
	iuphar: "iuphar.ligand",
	kegg_ligand: "kegg.compound",
	chebi: "chebi",
	#emolecules: "",
	#ibm: "",
	#atlas: "",
	#patents: "",
	#fdasrs: "",
	#surechem: "",
	pharmgkb: "pharmgkb.drug",
	#pubchem_tpharma: "",
	hmdb: "hmdb",
	pubchem: "pubchem.compound"
	#mcule: ""
}
@@baseuri = 
"https://www.ebi.ac.uk/unichem/rest"

Class Method Summary collapse

Class Method Details

.inchikey(key, all = false) ⇒ Object 



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# File 'lib/sylfy/service/unichemrest.rb', line 68

def inchikey(key, all = false)
	input = "inchikey#{all == true ? "_all" : ''}/#{key}"
	return perform(input)
end

.inchikey_all(key) ⇒ Object 



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# File 'lib/sylfy/service/unichemrest.rb', line 73

def inchikey_all(key)
	return inchikey(key, true)
end

.mapping(src_id, to_src_id) ⇒ Object 



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# File 'lib/sylfy/service/unichemrest.rb', line 63

def mapping(src_id, to_src_id)
	input = "mapping/#{src_id}/#{to_src_id}"
	return perform(input)
end

.perform(input) ⇒ Object 



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# File 'lib/sylfy/service/unichemrest.rb', line 43

def perform(input)
    
    uri = "#{@@baseuri}/#{input}"
    
    begin
        return JSON.parse(open(uri, "content_type" => 'application/json').read().strip())
    rescue OpenURI::HTTPError
        return JSON.parse("{}")
    end
end

.src_compound_id(src_cpd_id, src_id = 1, to_src_id = nil, all = false) ⇒ Object 



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# File 'lib/sylfy/service/unichemrest.rb', line 54

def src_compound_id(src_cpd_id, src_id = 1, to_src_id = nil, all = false)
    input = "src_compound_id#{all == true ? "_all" : ''}/#{src_cpd_id}/#{src_id}#{to_src_id != nil ? "/#{to_src_id}" : ""}"
    return perform(input)
end

.src_compound_id_all(src_cpd_id, src_id = 1, to_src_id = nil) ⇒ Object 



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# File 'lib/sylfy/service/unichemrest.rb', line 59

def src_compound_id_all(src_cpd_id, src_id = 1, to_src_id = nil)
	return src_compound_id(src_cpd_id, src_id, to_src_id, true)
end

.structure(src_cpd_id, src_id) ⇒ Object 



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# File 'lib/sylfy/service/unichemrest.rb', line 77

def structure(src_cpd_id, src_id)
	input = "structure/#{src_cpd_id}/#{src_id}"
	return perform(input)
end

.verbose_inchikey(key) ⇒ Object 



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# File 'lib/sylfy/service/unichemrest.rb', line 82

def verbose_inchikey(key)
	input = "verbose_inchikey/#{key}"
	return perform(input)
end