Module: Sylfy::Service::ENSEMBL::REST::Homology

Defined in:

lib/sylfy/service/ensemblrest/comparative.rb

Constant Summary

SERVICENAME =

'homology'

Class Method Summary

• .id(id, option = {}) ⇒ array of Hash

  Retrieves homology information by ensembl gene id.

• .symbol(species, symbol, option = {}) ⇒ array of Hash

  Retrieves homology information by symbol.

Class Method Details

.id(id, option = {}) ⇒ array of Hash

Retrieves homology information by ensembl gene id

Parameters:

• id (String) —

  Ensembl GeneTree ID

• option (String) (defaults to: {}) —

  option of service please consult http://beta.rest.ensembl.org/documentation/info/xref_id

Returns:

• (array of Hash) —

  results

# File 'lib/sylfy/service/ensemblrest/comparative.rb', line 121

def id(id, option = {})
  option_type = [:aligned, :callback, :format, :sequence, :species,  :target_species, :target_taxon, :type]
  get_path = "/#{SERVICENAME}/id/#{id}"
  return Sylfy::Service::ENSEMBLREST::service(get_path, option_type, option)
end

.symbol(species, symbol, option = {}) ⇒ array of Hash

Retrieves homology information by symbol

Parameters:

• species (String) —

  Registry name/aliases used to restrict searches by

• symbol (String) —

  The external name/symbol to search for

• option (String) (defaults to: {}) —

  option of service please consult http://beta.rest.ensembl.org/documentation/info/xref_id

Returns:

• (array of Hash) —

  results

# File 'lib/sylfy/service/ensemblrest/comparative.rb', line 137

def symbol(species, symbol, option = {})
  option_type = [:aligned, :callback, :compara, :external_db, :format, :sequence, :target_species, :target_taxon, :type]
  get_path = "/#{SERVICENAME}/symbol/#{species}/#{symbol}"
  return Sylfy::Service::ENSEMBLREST::service(get_path, option_type, option)
end