Module: Sylfy::Service::ENSEMBL::REST::Alignment

Defined in:

lib/sylfy/service/ensemblrest/comparative.rb

Constant Summary

SERVICENAME =

'alignment'

Class Method Summary

• .block(species, region, option = {}) ⇒ array of Hash

  Retrieves genomic alignments as separate blocks based on its location.

• .slice(species, region, option = {}) ⇒ array of Hash

  Retrieves genomic alignments as a single slice based on its location.

Class Method Details

.block(species, region, option = {}) ⇒ array of Hash

Retrieves genomic alignments as separate blocks based on its location

10Mb is allowed to be requested at any one time

Parameters:

• species (String) —

  Registry name/aliases used to restrict searches by

• region (String) —

  The region to retrieve sequence for. A maximum of

• option (String) (defaults to: {}) —

  option of service please consult http://beta.rest.ensembl.org/documentation/info/xref_id

Returns:

• (array of Hash) —

  results

# File 'lib/sylfy/service/ensemblrest/comparative.rb', line 28

def block(species, region, option = {})
	option_type = [:callback, :compact, :compara, :display_species_set, :mask, :method, :species_set, :species_set_group]
	get_path = "/#{SERVICENAME}/block/region/#{species}/#{region}"
	return Sylfy::Service::ENSEMBLREST::service(get_path, option_type, option)
end

.slice(species, region, option = {}) ⇒ array of Hash

Retrieves genomic alignments as a single slice based on its location

10Mb is allowed to be requested at any one time

Parameters:

• species (String) —

  Registry name/aliases used to restrict searches by

• region (String) —

  The region to retrieve sequence for. A maximum of

• option (String) (defaults to: {}) —

  option of service please consult http://beta.rest.ensembl.org/documentation/info/xref_id

Returns:

• (array of Hash) —

  results

# File 'lib/sylfy/service/ensemblrest/comparative.rb', line 45

def slice(species, region, option = {})
	option_type = [:callback, :compact, :compara, :display_species_set, :expanded, :mask, :method, :overlap, :species_set, :species_set_group]
	get_path = "/#{SERVICENAME}/slice/region/#{species}/#{region}"
	return Sylfy::Service::ENSEMBLREST::service(get_path, option_type, option)
end