Module: SwissmedicDiff::Diff
- Included in:
- SwissmedicDiff
- Defined in:
- lib/swissmedic-diff.rb
Constant Summary collapse
- COLUMNS_2014 =
{ :iksnr => /Zulassungs-Nummer/i, # column-nr: 0 :seqnr => /Dosistärke-nummer|^Sequenz$/i, :name_base => /Präparatebezeichnung|^Sequenzname$/i, :company => /Zulassungsinhaberin/i, :index_therapeuticus => /IT-Nummer/i, :atc_class => /ATC-Code/i, # column-nr: 5 :production_science => /Heilmittelcode/i, :registration_date => /Erstzul.datum Präp./i, :sequence_date => /Zul.datum Dosisstärke *|Zul.datum Sequenz/i, :expiry_date => /Gültigkeits-datum */i, :ikscd => /Verpackungs ID/i, # column-nr: 10 :size => /Packungsgrösse/i, :unit => /Einheit/i, :ikscat => /Abgabekategorie/i, :substances => /Wirkstoff/i, :composition => /Zusammensetzung/i, # column-nr: 15 :indication_registration => /Anwendungsgebiet Präparate/i, :indication_sequence => /Anwendungsgebiet Dosisstärke|Anwendungsgebiet Sequenz/i, }
- COLUMNS_OLD =
[ :iksnr, :seqnr, :name_base, :company, :index_therapeuticus, :atc_class, :production_science, :registration_date, :sequence_date, :expiry_date, :ikscd, :size, :unit, :ikscat, :substances, :composition, :indication_registration, :indication_sequence ]
- COLUMNS_JULY_2015 =
{ :iksnr => /Zulassungs-Nummer/i, # column-nr: 0 :seqnr => /Dosisstärke-nummer/i, :name_base => /Präparatebezeichnung/i, :company => /Zulassungsinhaberin/i, :production_science => /Heilmittelcode/i, :index_therapeuticus => /IT-Nummer/i, # column-nr: 5 :atc_class => /ATC-Code/i, :registration_date => /Erstzulassungs-datum./i, :sequence_date => /Zul.datum Dosisstärke/i, :expiry_date => /Gültigkeitsdauer der Zulassung/i, :ikscd => /Packungscode/i, # column-nr: 10 :size => /Packungsgrösse/i, :unit => /Einheit/i, :ikscat => /Abgabekategorie Packung/i, :ikscat_seq => /Abgabekategorie Dosisstärke/i, :ikscat_preparation => /Abgabekategorie Präparat/i, # column-nr: 15 :substances => /Wirkstoff/i, :composition => /Zusammensetzung/i, :indication_registration => /Anwendungsgebiet Präparat/i, :indication_sequence => /Anwendungsgebiet Dosisstärke/i, :gen_production => /Gentechnisch hergestellte Wirkstoffe/i, # column-nr 20 :insulin_category => /Kategorie bei Insulinen/i, :drug_index => /Verz. bei betäubunsmittel-haltigen Präparaten/i, }
- FLAGS =
{ :new => 'Neues Produkt', :name_base => 'Namensänderung', :ikscat => 'Abgabekategorie', :index_therapeuticus => 'Index Therapeuticus', :indication_registration => 'Anwendungsgebiet Präparate', :indication_sequence => 'Anwendungsgebiet Sequenz', :company => 'Zulassungsinhaber', :composition => 'Zusammensetzung', :sequence => 'Packungen', :size => 'Packungsgrösse', :expiry_date => 'Ablaufdatum der Zulassung', :registration_date => 'Erstzulassungsdatum', :sequence_date => 'Zulassungsdatum Sequenz', :delete => 'Das Produkt wurde gelöscht', :replaced_package => 'Packungs-Nummer', :substances => 'Wirkstoffe', :production_science => 'Heilmittelcode', :atc_class => 'ATC-Code', }
- GALFORM_P =
%r{excipiens\s+(ad|pro)\s+(?<galform>((?!\bpro\b)[^.])+)}
Instance Method Summary collapse
- #_comparable(key, row, idx) ⇒ Object
- #_known_data(latest, known_regs, known_seqs, known_pacs, newest_rows) ⇒ Object
- #_sort_by(sort, iksnr, flags) ⇒ Object
- #capitalize(string) ⇒ Object
- #cell(row, pos) ⇒ Object
- #describe(diff, iksnr) ⇒ Object
- #describe_flag(diff, iksnr, flag) ⇒ Object
-
#diff(target, latest, ignore = []) ⇒ Object
Comparison two Excel files.
-
#each_valid_row(spreadsheet) ⇒ Object
iterate over all valid rows of a swissmedic Packungen.xls.
- #format_flags(flags) ⇒ Object
- #get_column_indices(spreadsheet) ⇒ Object
- #known_data(latest) ⇒ Object
- #name(diff, iksnr) ⇒ Object
- #rows_diff(row, other, ignore = []) ⇒ Object
- #rows_to_skip(spreadsheet) ⇒ Object
-
#to_s(sort = :group) ⇒ Object
Output the differencies with String.
Instance Method Details
#_comparable(key, row, idx) ⇒ Object
319 320 321 322 323 324 325 326 327 328 329 330 |
# File 'lib/swissmedic-diff.rb', line 319 def _comparable(key, row, idx) if cell = row[idx] case key when :registration_date, :expiry_date row[idx] && row[idx].value ? row[idx].value.to_date : nil when :seqnr sprintf "%02i", cell(row, idx).to_i else cell(row, idx).downcase.gsub(/\s+/, "") end end end |
#_known_data(latest, known_regs, known_seqs, known_pacs, newest_rows) ⇒ Object
226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 |
# File 'lib/swissmedic-diff.rb', line 226 def _known_data(latest, known_regs, known_seqs, known_pacs, newest_rows) lbook = Spreadsheet.open(latest) @latest_keys = get_column_indices(lbook).keys idx, prr, prp = nil multiples = {} each_valid_row(lbook) { |row| iksnr = cell(row, @latest_keys.index(:iksnr)) seqnr = cell(row, @latest_keys.index(:seqnr)) pacnr = cell(row, @latest_keys.index(:ikscd)) multiples[iksnr] ||= {} if prr == iksnr && prp == pacnr idx += 1 elsif previous = multiples[iksnr][pacnr] prr = iksnr prp = pacnr idx = previous[@latest_keys.size].to_i + 1 else prr = iksnr prp = pacnr idx = 0 end multiples[iksnr][pacnr] = row row[@latest_keys.size] = idx known_regs.store [iksnr], row known_seqs.store [iksnr, seqnr], row known_pacs.store [iksnr, pacnr, idx], row (newest_rows[iksnr] ||= {})[pacnr] = row } end |
#_sort_by(sort, iksnr, flags) ⇒ Object
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 |
# File 'lib/swissmedic-diff.rb', line 302 def _sort_by(sort, iksnr, flags) case sort when :name [name(@diff, iksnr), iksnr] when :registration iksnr else weight = if(flags.include? :new) 0 elsif(flags.include? :delete) 1 else 2 end [weight, iksnr] end end |
#capitalize(string) ⇒ Object
101 102 103 |
# File 'lib/swissmedic-diff.rb', line 101 def capitalize(string) string.split(/\s+/).collect { |word| word.capitalize }.join(' ') end |
#cell(row, pos) ⇒ Object
104 105 106 107 108 |
# File 'lib/swissmedic-diff.rb', line 104 def cell(row, pos) if(cell = row[pos]) cell.to_s end end |
#describe(diff, iksnr) ⇒ Object
109 110 111 |
# File 'lib/swissmedic-diff.rb', line 109 def describe(diff, iksnr) sprintf("%s: %s", iksnr, name(diff, iksnr)) end |
#describe_flag(diff, iksnr, flag) ⇒ Object
112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 |
# File 'lib/swissmedic-diff.rb', line 112 def describe_flag(diff, iksnr, flag) txt = FLAGS.fetch(flag, flag) case flag when :sequence when :replaced_package pairs = diff.newest_rows[iksnr].collect { |rep, row| if(old = diff.replacements[row]) [old, rep].join(' -> ') end }.compact sprintf "%s (%s)", txt, pairs.join(',') when :registration_date, :expiry_date row = diff.newest_rows[iksnr].sort.first.last sprintf "%s (%s)", txt, row[COLUMNS_2014.keys.index(flag)].value.strftime('%d.%m.%Y') else row = diff.newest_rows[iksnr].sort.first.last sprintf "%s (%s)", txt, cell(row, COLUMNS_2014.keys.index(flag)) end end |
#diff(target, latest, ignore = []) ⇒ Object
Comparison two Excel files
- target
-
new file path (String)
- latest
-
old file path (String)
- ignore
-
columns not to be compared (Symbol)
- return
-
differences (OpenStruct class)
139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 |
# File 'lib/swissmedic-diff.rb', line 139 def diff(target, latest, ignore = []) replacements = {} known_regs, known_seqs, known_pacs, newest_rows = known_data(latest) @diff = OpenStruct.new @diff.news = news = [] @diff.updates = updates = [] @diff.changes = changes = {} @diff.newest_rows = newest_rows Spreadsheet.client_encoding = 'UTF-8' tbook = Spreadsheet.open(target) idx, prr, prp = nil multiples = {} @latest_keys = get_column_indices(Spreadsheet.open(latest)).keys @target_keys = get_column_indices(tbook).keys each_valid_row(tbook) { |row| iksnr = cell(row, @target_keys.index(:iksnr)) seqnr = cell(row, @target_keys.index(:seqnr)) pacnr = cell(row, @target_keys.index(:ikscd)) (multiples[iksnr] ||= {}) if prr == iksnr && prp == pacnr idx += 1 elsif previous = multiples[iksnr][pacnr] prr = iksnr prp = pacnr idx = previous[@target_keys.size].to_i + 1 else prr = iksnr prp = pacnr idx = 0 end row[@target_keys.size] = idx (newest_rows[iksnr] ||= {})[pacnr] = row multiples[iksnr][pacnr] = row if(other = known_regs.delete([iksnr])) changes[iksnr] ||= [] else changes[iksnr] ||= [:new] end known_seqs.delete([iksnr, seqnr]) if(other = known_pacs.delete([iksnr, pacnr, idx])) flags = rows_diff(row, other, ignore) (changes[iksnr].concat flags).uniq! updates.push row unless flags.empty? else replacements.store [ iksnr, seqnr, cell(row, @target_keys.index(:size)), cell(row, @target_keys.index(:unit)) ], row flags = changes[iksnr] flags.push(:sequence).uniq! unless(flags.include? :new) news.push row end } @diff.replacements = reps = {} known_pacs.each { |(iksnr, pacnr), row| key = [iksnr, '%02i' % cell(row, @target_keys.index(:seqnr)).to_i, cell(row, @target_keys.index(:size)), cell(row, @target_keys.index(:unit))] if(rep = replacements[key]) changes[iksnr].push :replaced_package reps.store rep, pacnr end } known_regs.each_key { |(iksnr,_)| changes[iksnr] = [:delete] } changes.delete_if { |iksnr, flags| flags.empty? } @diff.package_deletions = known_pacs.collect { |key, row| ## the keys in known_pacs don't include the sequence number (which # would prevent us from properly recognizing multi-sequence-Packages), # so we need complete the path to the package now key[1,0] = '%02i' % cell(row, @target_keys.index(:seqnr)).to_i key } @diff.sequence_deletions = known_seqs.keys @diff.registration_deletions = known_regs.keys @diff end |
#each_valid_row(spreadsheet) ⇒ Object
iterate over all valid rows of a swissmedic Packungen.xls
Iterates over all rows, ignoring Tierarzneimittel and lines with not enough data Patches the fields :iksnr, :seqnr, :ikscd to match the old swissmedic convention of a fixed sized string
example:
SwissmedicDiff.new.each_valid_row(Spreadsheet.open('path/to/file')) { |x| puts "iksnr #{x[0]}" }
- spreadsheet
-
spreadsheet to operate on
- return
381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 |
# File 'lib/swissmedic-diff.rb', line 381 def each_valid_row(spreadsheet) skipRows = rows_to_skip(spreadsheet) column_keys = get_column_indices(spreadsheet).keys worksheet = spreadsheet.worksheet(0) row_nr = 0 worksheet.each() { |row| row_nr += 1 next if row_nr <= skipRows break unless row if row.size < column_keys.size/2 $stdout.puts "Data missing in \n(line " + (row_nr).to_s + "): " + row.join(", ").to_s + "\n" next end next if (cell(row, column_keys.index(:production_science)) == 'Tierarzneimittel') row[column_keys.index(:iksnr)] = "%05i" % cell(row, column_keys.index(:iksnr)).to_i row[column_keys.index(:seqnr)] = "%02i" % cell(row, column_keys.index(:seqnr)).to_i row[column_keys.index(:ikscd)] = "%03i" % cell(row, column_keys.index(:ikscd)).to_i yield row } end |
#format_flags(flags) ⇒ Object
212 213 214 215 216 217 |
# File 'lib/swissmedic-diff.rb', line 212 def format_flags(flags) flags.delete(:revision) flags.collect { |flag| "- %s\n" % FLAGS.fetch(flag, "Unbekannt (#{flag})") }.compact.join end |
#get_column_indices(spreadsheet) ⇒ Object
332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 |
# File 'lib/swissmedic-diff.rb', line 332 def get_column_indices(spreadsheet) error_2014 = nil filename = spreadsheet.root.filepath headerRowId = rows_to_skip(spreadsheet)-1 row = spreadsheet.worksheet(0)[headerRowId] COLUMNS_2014.each{ |key, value| header_name = row[COLUMNS_2014.keys.index(key)].value unless value.match(header_name) puts "#{__LINE__}: #{key} -> #{COLUMNS_2014.keys.index(key)} #{value}\nbut was #{header_name}" if $VERBOSE error_2014 = "#{filename}_has_unexpected_column_#{COLUMNS_2014.keys.index(key)}_#{key}_#{value.to_s}_but_was_#{header_name}" break end } return COLUMNS_2014 unless error_2014 error_2015 = nil COLUMNS_JULY_2015.each{ |key, value| header_name = row[COLUMNS_JULY_2015.keys.index(key)].value unless value.match(header_name) puts "#{__LINE__}: #{key} -> #{COLUMNS_JULY_2015.keys.index(key)} #{value}\nbut was #{header_name}" if $VERBOSE error_2015 = "#{filename}_has_unexpected_column_#{COLUMNS_JULY_2015.keys.index(key)}_#{key}_#{value.to_s}_but_was_#{header_name}" break end } unless error_2015 idx14 = COLUMNS_2014.keys.index(:name_base) idx15 = COLUMNS_2014.keys.index(:name_base) if (idx14 != idx15) raise ":name_base must be same index in COLUMNS_JULY_2015 and COLUMNS_2014. Is #{idx14} and #{idx15}" end return COLUMNS_JULY_2015 end raise "#{error_2015}\n#{error_2014}" end |
#known_data(latest) ⇒ Object
218 219 220 221 222 223 224 225 |
# File 'lib/swissmedic-diff.rb', line 218 def known_data(latest) known_regs = {} known_seqs = {} known_pacs = {} newest_rows = {} _known_data latest, known_regs, known_seqs, known_pacs, newest_rows [known_regs, known_seqs, known_pacs, newest_rows] end |
#name(diff, iksnr) ⇒ Object
255 256 257 258 259 |
# File 'lib/swissmedic-diff.rb', line 255 def name(diff, iksnr) rows = diff.newest_rows[iksnr] row = rows.sort.first.last cell(row, COLUMNS_2014.keys.index(:name_base)) end |
#rows_diff(row, other, ignore = []) ⇒ Object
260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 |
# File 'lib/swissmedic-diff.rb', line 260 def rows_diff(row, other, ignore = []) flags = [] COLUMNS_OLD.each_with_index { |key, idx| if !ignore.include?(key) left = _comparable(key, row, @target_keys.index(key)) right = _comparable(key, other, @latest_keys.index(key)) next if left.is_a?(Date) and right.is_a?(Date) and left.start.eql?(right.start) next if left.is_a?(String) and left.empty? and not right next if right.is_a?(String) and right.empty? and not left if left != right flags.push key end end } flags end |
#rows_to_skip(spreadsheet) ⇒ Object
403 404 405 406 407 408 409 410 411 412 413 414 |
# File 'lib/swissmedic-diff.rb', line 403 def rows_to_skip(spreadsheet) # Packungen.xls of swissmedic before October 2013 had 3 leading rows # Packungen.xls of swissmedic after October 2013 have 4 leading rows j = 0 while true cell = spreadsheet.worksheet(0).row(j)[0] cell = cell.value if cell.is_a?(RubyXL::Cell) break if cell.respond_to?(:to_i) and cell.to_i != 0 j += 1 end j end |
#to_s(sort = :group) ⇒ Object
Output the differencies with String
This should be called after diff method.
- sort
-
sort key (:group | :name | :registration)
- return
-
difference (String)
285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 |
# File 'lib/swissmedic-diff.rb', line 285 def to_s(sort=:group) @diff ||= nil return '' unless @diff @diff.changes.sort_by { |iksnr, flags| _sort_by(sort, iksnr, flags) }.collect { |iksnr, flags| if(flags.include? :new) "+ " << describe(@diff, iksnr) elsif(flags.include? :delete) "- " << describe(@diff, iksnr) else "> " << describe(@diff, iksnr) << "; " \ << flags.collect { |flag| describe_flag(@diff, iksnr, flag) }.compact.join(", ") end }.join("\n") end |