Class: SVMKit::Ensemble::RandomForestClassifier

Inherits:
Object
  • Object
show all
Includes:
Base::BaseEstimator, Base::Classifier
Defined in:
lib/svmkit/ensemble/random_forest_classifier.rb

Overview

RandomForestClassifier is a class that implements random forest for classification.

Examples:

estimator =
  SVMKit::Ensemble::RandomForestClassifier.new(
    n_estimators: 10, criterion: 'gini', max_depth: 3, max_leaf_nodes: 10, min_samples_leaf: 5, random_seed: 1)
estimator.fit(training_samples, traininig_labels)
results = estimator.predict(testing_samples)

Instance Attribute Summary collapse

Attributes included from Base::BaseEstimator

#params

Instance Method Summary collapse

Methods included from Base::Classifier

#score

Constructor Details

#initialize(n_estimators: 10, criterion: 'gini', max_depth: nil, max_leaf_nodes: nil, min_samples_leaf: 1, max_features: nil, random_seed: nil) ⇒ RandomForestClassifier

Create a new classifier with random forest.

Parameters:

  • n_estimators (Integer) (defaults to: 10) —

    The numeber of decision trees for contructing random forest.

  • criterion (String) (defaults to: 'gini') —

    The function to evalue spliting point. Supported criteria are ‘gini’ and ‘entropy’.

  • max_depth (Integer) (defaults to: nil) —

    The maximum depth of the tree. If nil is given, decision tree grows without concern for depth.

  • max_leaf_nodes (Integer) (defaults to: nil) —

    The maximum number of leaves on decision tree. If nil is given, number of leaves is not limited.

  • min_samples_leaf (Integer) (defaults to: 1) —

    The minimum number of samples at a leaf node.

  • max_features (Integer) (defaults to: nil) —

    The number of features to consider when searching optimal split point. If nil is given, split process considers all features.

  • random_seed (Integer) (defaults to: nil) —

    The seed value using to initialize the random generator. It is used to randomly determine the order of features when deciding spliting point.



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# File 'lib/svmkit/ensemble/random_forest_classifier.rb', line 55

def initialize(n_estimators: 10,
               criterion: 'gini', max_depth: nil, max_leaf_nodes: nil, min_samples_leaf: 1,
               max_features: nil, random_seed: nil)
  check_params_type_or_nil(Integer, max_depth: max_depth, max_leaf_nodes: max_leaf_nodes,
                                    max_features: max_features, random_seed: random_seed)
  check_params_integer(n_estimators: n_estimators, min_samples_leaf: min_samples_leaf)
  check_params_string(criterion: criterion)
  check_params_positive(n_estimators: n_estimators, max_depth: max_depth,
                        max_leaf_nodes: max_leaf_nodes, min_samples_leaf: min_samples_leaf,
                        max_features: max_features)
  @params = {}
  @params[:n_estimators] = n_estimators
  @params[:criterion] = criterion
  @params[:max_depth] = max_depth
  @params[:max_leaf_nodes] = max_leaf_nodes
  @params[:min_samples_leaf] = min_samples_leaf
  @params[:max_features] = max_features
  @params[:random_seed] = random_seed
  @params[:random_seed] ||= srand
  @estimators = nil
  @classes = nil
  @feature_importances = nil
  @rng = Random.new(@params[:random_seed])
end

Instance Attribute Details

#classes ⇒ Numo::Int32 (readonly)

Return the class labels.

Returns:

  • (Numo::Int32) —

    (size: n_classes)



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# File 'lib/svmkit/ensemble/random_forest_classifier.rb', line 32

def classes
  @classes
end

#estimators ⇒ Array<DecisionTreeClassifier> (readonly)

Return the set of estimators.

Returns:

  • (Array<DecisionTreeClassifier>) 


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# File 'lib/svmkit/ensemble/random_forest_classifier.rb', line 28

def estimators
  @estimators
end

#feature_importances ⇒ Numo::DFloat (readonly)

Return the importance for each feature.

Returns:

  • (Numo::DFloat) —

    (size: n_features)



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# File 'lib/svmkit/ensemble/random_forest_classifier.rb', line 36

def feature_importances
  @feature_importances
end

#rng ⇒ Random (readonly)

Return the random generator for random selection of feature index.

Returns:

  • (Random) 


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# File 'lib/svmkit/ensemble/random_forest_classifier.rb', line 40

def rng
  @rng
end

Instance Method Details

#apply(x) ⇒ Numo::Int32

Return the index of the leaf that each sample reached.

Parameters:

  • x (Numo::DFloat) —

    (shape: [n_samples, n_features]) The samples to predict the labels.

Returns:

  • (Numo::Int32) —

    (shape: [n_samples, n_estimators]) Leaf index for sample.



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# File 'lib/svmkit/ensemble/random_forest_classifier.rb', line 155

def apply(x)
  check_sample_array(x)
  Numo::Int32[*Array.new(@params[:n_estimators]) { |n| @estimators[n].apply(x) }].transpose
end

#fit(x, y) ⇒ RandomForestClassifier

Fit the model with given training data.

Parameters:

  • x (Numo::DFloat) —

    (shape: [n_samples, n_features]) The training data to be used for fitting the model.

  • y (Numo::Int32) —

    (shape: [n_samples]) The labels to be used for fitting the model.

Returns:



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# File 'lib/svmkit/ensemble/random_forest_classifier.rb', line 85

def fit(x, y)
  check_sample_array(x)
  check_label_array(y)
  check_sample_label_size(x, y)
  # Initialize some variables.
  n_samples, n_features = x.shape
  @params[:max_features] = Math.sqrt(n_features).to_i unless @params[:max_features].is_a?(Integer)
  @params[:max_features] = [[1, @params[:max_features]].max, n_features].min
  @classes = Numo::Int32.asarray(y.to_a.uniq.sort)
  @feature_importances = Numo::DFloat.zeros(n_features)
  # Construct forest.
  @estimators = Array.new(@params[:n_estimators]) do
    tree = Tree::DecisionTreeClassifier.new(
      criterion: @params[:criterion], max_depth: @params[:max_depth],
      max_leaf_nodes: @params[:max_leaf_nodes], min_samples_leaf: @params[:min_samples_leaf],
      max_features: @params[:max_features], random_seed: @rng.rand(SVMKit::Values.int_max)
    )
    bootstrap_ids = Array.new(n_samples) { @rng.rand(0...n_samples) }
    tree.fit(x[bootstrap_ids, true], y[bootstrap_ids])
    @feature_importances += tree.feature_importances
    tree
  end
  @feature_importances /= @feature_importances.sum
  self
end

#marshal_dump ⇒ Hash

Dump marshal data.

Returns:

  • (Hash) —

    The marshal data about RandomForestClassifier.



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# File 'lib/svmkit/ensemble/random_forest_classifier.rb', line 162

def marshal_dump
  { params: @params,
    estimators: @estimators,
    classes: @classes,
    feature_importances: @feature_importances,
    rng: @rng }
end

#marshal_load(obj) ⇒ nil

Load marshal data.

Returns:

  • (nil) 


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# File 'lib/svmkit/ensemble/random_forest_classifier.rb', line 172

def marshal_load(obj)
  @params = obj[:params]
  @estimators = obj[:estimators]
  @classes = obj[:classes]
  @feature_importances = obj[:feature_importances]
  @rng = obj[:rng]
  nil
end

#predict(x) ⇒ Numo::Int32

Predict class labels for samples.

Parameters:

  • x (Numo::DFloat) —

    (shape: [n_samples, n_features]) The samples to predict the labels.

Returns:

  • (Numo::Int32) —

    (shape: [n_samples]) Predicted class label per sample.



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# File 'lib/svmkit/ensemble/random_forest_classifier.rb', line 115

def predict(x)
  check_sample_array(x)
  n_samples, = x.shape
  n_classes = @classes.size
  classes_arr = @classes.to_a
  ballot_box = Numo::DFloat.zeros(n_samples, n_classes)
  @estimators.each do |tree|
    predicted = tree.predict(x)
    n_samples.times do |n|
      class_id = classes_arr.index(predicted[n])
      ballot_box[n, class_id] += 1.0 unless class_id.nil?
    end
  end
  Numo::Int32[*Array.new(n_samples) { |n| @classes[ballot_box[n, true].max_index] }]
end

#predict_proba(x) ⇒ Numo::DFloat

Predict probability for samples.

Parameters:

  • x (Numo::DFloat) —

    (shape: [n_samples, n_features]) The samples to predict the probailities.

Returns:

  • (Numo::DFloat) —

    (shape: [n_samples, n_classes]) Predicted probability of each class per sample.



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# File 'lib/svmkit/ensemble/random_forest_classifier.rb', line 135

def predict_proba(x)
  check_sample_array(x)
  n_samples, = x.shape
  n_classes = @classes.size
  classes_arr = @classes.to_a
  ballot_box = Numo::DFloat.zeros(n_samples, n_classes)
  @estimators.each do |tree|
    probs = tree.predict_proba(x)
    tree.classes.size.times do |n|
      class_id = classes_arr.index(tree.classes[n])
      ballot_box[true, class_id] += probs[true, n] unless class_id.nil?
    end
  end
  (ballot_box.transpose / ballot_box.sum(axis: 1)).transpose
end