Class: SimpleBioC::Passage

Inherits:
Object
  • Object
show all
Defined in:
lib/simple_bioc/passage.rb

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(parent) ⇒ Passage

Returns a new instance of Passage.



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# File 'lib/simple_bioc/passage.rb', line 6

def initialize(parent)
  @infons = {}
  @sentences = []
  @annotations = []
  @relations = []
  @document = parent
end

Instance Attribute Details

#annotations ⇒ Object

Returns the value of attribute annotations.



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# File 'lib/simple_bioc/passage.rb', line 3

def annotations
  @annotations
end

#document ⇒ Object (readonly)

Returns the value of attribute document.



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# File 'lib/simple_bioc/passage.rb', line 4

def document
  @document
end

#infons ⇒ Object

Returns the value of attribute infons.



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# File 'lib/simple_bioc/passage.rb', line 3

def infons
  @infons
end

#offset ⇒ Object

Returns the value of attribute offset.



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# File 'lib/simple_bioc/passage.rb', line 3

def offset
  @offset
end

#relations ⇒ Object

Returns the value of attribute relations.



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# File 'lib/simple_bioc/passage.rb', line 3

def relations
  @relations
end

#sentences ⇒ Object

Returns the value of attribute sentences.



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# File 'lib/simple_bioc/passage.rb', line 3

def sentences
  @sentences
end

#text ⇒ Object

Returns the value of attribute text.



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# File 'lib/simple_bioc/passage.rb', line 3

def text
  @text
end

Instance Method Details

#all_annotations(ret) ⇒ Object 



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# File 'lib/simple_bioc/passage.rb', line 37

def all_annotations(ret)
  @annotations.each{|a| ret << a}
  @sentences.each{|s| s.all_annotations(ret)}
end

#all_relations(ret) ⇒ Object 



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# File 'lib/simple_bioc/passage.rb', line 42

def all_relations(ret)
  @relations.each{|r| ret << r}
  @sentences.each{|s| s.all_relations(ret)}
end

#all_texts ⇒ Object 



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# File 'lib/simple_bioc/passage.rb', line 32

def all_texts
  return text unless self.text.nil?
  @sentences.map{|s| s.text}.join(" ")
end

#each_relation ⇒ Object 



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# File 'lib/simple_bioc/passage.rb', line 27

def each_relation
  @relations.each{|r| yield r}
  @sentences.each{|s| s.each_relation{|r| yield r}}
end

#find_node(id) ⇒ Object 



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# File 'lib/simple_bioc/passage.rb', line 18

def find_node(id)
  (@relations+@annotations).each{|n| return n if n.id == id}
  @sentences.each do |s|
    ret = s.find_node(id)
    return ret unless ret.nil?
  end
  nil
end

#to_s ⇒ Object 



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# File 'lib/simple_bioc/passage.rb', line 14

def to_s
  "Passage @#{@offset}: #{@text}"  
end