Class: ActionLowHighSize

Inherits:
SeqtrimAction show all
Defined in:
lib/seqtrimnext/actions/action_low_high_size.rb

Overview

Author: Almudena Bocinos Rioboo

Defines the main methods that are necessary to execute PluginActionLowHighSize

Inherit: Plugin

Instance Attribute Summary

Attributes inherited from SeqtrimAction

#cut, #end_pos, #found_definition, #informative, #left_action, #message, #reversed, #right_action, #start_pos, #tag_id

Instance Method Summary collapse

Methods inherited from SeqtrimAction

#action_type, #apply_to, #contains?, #contains_action?, #decorate, #description, #inspect, #left_action?, #near_left?, #right_action?, #title, #to_hash, #to_human, #type

Constructor Details

#initialize(start_pos, end_pos) ⇒ ActionLowHighSize

Returns a new instance of ActionLowHighSize.



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# File 'lib/seqtrimnext/actions/action_low_high_size.rb', line 12

def initialize(start_pos,end_pos)
  super(start_pos,end_pos)    
  @cut =false

end

Instance Method Details

#apply_decoration(char) ⇒ Object

def apply_to(seq)

# seq.seq_fasta = seq.seq_fasta.slice(start_pos,end_pos)
$LOG.debug " Applying #{self.class}  to #{seq.seq_name}. This sequence will be ignored due to low or high size " 
#delete sequence if it was created

end



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# File 'lib/seqtrimnext/actions/action_low_high_size.rb', line 27

def apply_decoration(char)
  return char.on_magenta
end