Class: Result

Inherits:
Object
  • Object
show all
Defined in:
lib/ruby_astm/result.rb

Direct Known Subclasses

Hl7Observation

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(args = {}) ⇒ Result

here will call mappings and check the result correlation



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# File 'lib/ruby_astm/result.rb', line 122

def initialize(args={})
  #puts "called initialize result"
  set_name(args)
  set_flags(args)
  set_value(args)
  set_timestamp(args)
  set_dilution(args)
  set_units(args)


=begin
  if args[:line]
    line = args[:line]
    transform_expression = nil
    line.fields[2].scan(/\^+(?<name>[A-Za-z0-9\%\#\-\_\?\/]+)\^?(?<dilution>\d+)?/) { |name,dilution|  
      self.name = lookup_mapping(name)
      self.dilution = dilution
      transform_expression = lookup_transform(name)
    }
    self.value = line.fields[3].strip
    if transform_expression
      self.value = eval(transform_expression)
    end
    self.reference_ranges = line.fields[5].strip
    self.flags = line.fields[6].strip 
    line.fields[12].strip.scan(/(?<year>\d{4})(?<month>\d{2})(?<day>\d{2})(?<hours>\d{2})(?<minutes>\d{2})(?<seconds>\d{2})/) {|year,month,day,hours,minutes,seconds|
      self.timestamp = Time.new(year,month,day,hours,minutes,seconds)
    }
  else
    super
  end
=end


end

Instance Attribute Details

#dilution ⇒ Object

Returns the value of attribute dilution.



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# File 'lib/ruby_astm/result.rb', line 9

def dilution
  @dilution
end

#flags ⇒ Object

Returns the value of attribute flags.



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# File 'lib/ruby_astm/result.rb', line 6

def flags
  @flags
end

#machine_name ⇒ Object

sometimes we customize the lis code based on the machine which is sending it, so we need this.



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# File 'lib/ruby_astm/result.rb', line 12

def machine_name
  @machine_name
end

#name ⇒ Object

Returns the value of attribute name.



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# File 'lib/ruby_astm/result.rb', line 2

def name
  @name
end

#reference_ranges ⇒ Object

Returns the value of attribute reference_ranges.



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# File 'lib/ruby_astm/result.rb', line 8

def reference_ranges
  @reference_ranges
end

#report_name ⇒ Object

Returns the value of attribute report_name.



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# File 'lib/ruby_astm/result.rb', line 3

def report_name
  @report_name
end

#timestamp ⇒ Object

Returns the value of attribute timestamp.



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# File 'lib/ruby_astm/result.rb', line 7

def timestamp
  @timestamp
end

#units ⇒ Object

Returns the value of attribute units.



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# File 'lib/ruby_astm/result.rb', line 5

def units
  @units
end

#value ⇒ Object

Returns the value of attribute value.



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# File 'lib/ruby_astm/result.rb', line 4

def value
  @value
end

Instance Method Details

#lookup_mapping(name) ⇒ Object

@return the name defined in the mappings.json file, or the name that wqs passed in.



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# File 'lib/ruby_astm/result.rb', line 158

def lookup_mapping(name)
  unless $mappings[name].blank?
    unless self.machine_name.blank?
      unless $mappings[name]["MACHINE_SPECIFIC_LIS_CODES"].blank?
        unless $mappings[name]["MACHINE_SPECIFIC_LIS_CODES"][self.machine_name].blank?
          redirect = $mappings[name]["MACHINE_SPECIFIC_LIS_CODES"][self.machine_name]
          unless $mappings[redirect].blank?
            $mappings[redirect]["LIS_CODE"]
          end
        end
      end    
    else
      $mappings[name]["LIS_CODE"]
    end
  else
    name
  end
  #$mappings[name] ? $mappings[name]["LIS_CODE"] : name 
end

#lookup_report_name(name) ⇒ Object 



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# File 'lib/ruby_astm/result.rb', line 182

def lookup_report_name(name)
  $mappings[name] ? $mappings[name]["REPORT_NAME"] : name
end

#lookup_transform(name) ⇒ Object 



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# File 'lib/ruby_astm/result.rb', line 178

def lookup_transform(name)
  $mappings[name] ? $mappings[name]["TRANSFORM"] : nil
end

#set_dilution(args) ⇒ Object 



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# File 'lib/ruby_astm/result.rb', line 103

def set_dilution(args)
  if line = args[:line]

    unless line.fields[2].blank?
      line.fields[2].scan(/\^+(?<name>[A-Za-z0-9\%\#\-\_\?\/]+)\^?(?<dilution>\d+)?/) { |name,dilution|  
        self.dilution = dilution unless self.dilution
      }
    end

  end
end

#set_flags(args) ⇒ Object 



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# File 'lib/ruby_astm/result.rb', line 69

def set_flags(args)
  if line = args[:line]

    unless line.fields[6].blank?
      self.flags = line.fields[6].strip
    end

  end 
end

#set_machine_name(args) ⇒ Object 



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# File 'lib/ruby_astm/result.rb', line 115

def set_machine_name(args)
  self.machine_name = args[:machine_name]
end

#set_name(args) ⇒ Object 



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# File 'lib/ruby_astm/result.rb', line 14

def set_name(args)
  puts "came to set name"
  if line = args[:line]
    puts "line fields is: #{line.fields}"
    unless line.fields[2].blank?
      puts "line fields 2 is:"
      puts line.fields[2]
      line.fields[2].scan(/^\^+(?<name>[A-Za-z0-9\%\#\-\_\?\/]+)\^?(?<dilution>\d+)?/) { |name,dilution|  
        
        self.name = lookup_mapping(name)
        
        self.report_name = lookup_report_name(name)

      }
    end

    unless self.name.blank?
      self.name.scan(/(?<test_name>\d+)\/(?<dilution>\d+)\/(?<pre_dilution>[a-zA-Z0-9]+)/) { |test_name,dilution,pre_dilution|

        self.name = lookup_mapping(test_name)

        self.report_name = lookup_report_name(test_name)

        self.dilution = dilution

      }
    end


  end
end

#set_reference_ranges(args) ⇒ Object 



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# File 'lib/ruby_astm/result.rb', line 93

def set_reference_ranges(args)
  if line = args[:line]

    unless line.fields[5].blank?
      self.reference_ranges = line.fields[5].strip
    end

  end
end

#set_timestamp(args) ⇒ Object 



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# File 'lib/ruby_astm/result.rb', line 83

def set_timestamp(args)
  if line = args[:line]
    unless line.fields[12].blank?
      line.fields[12].strip.scan(/(?<year>\d{4})(?<month>\d{2})(?<day>\d{2})(?<hours>\d{2})(?<minutes>\d{2})(?<seconds>\d{2})/) {|year,month,day,hours,minutes,seconds|
        self.timestamp = Time.new(year,month,day,hours,minutes,seconds)
      }
    end
  end
end

#set_units(args) ⇒ Object 



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# File 'lib/ruby_astm/result.rb', line 79

def set_units(args)

end

#set_value(args) ⇒ Object 



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# File 'lib/ruby_astm/result.rb', line 46

def set_value(args)
  if line = args[:line]

    unless line.fields[3].blank?
      self.value = line.fields[3].strip
      self.value.scan(/(?<flag>\d+)\^(?<value>\d?\.?\d+)/) {|flag,value|
        self.value = value
      }
    end
    unless line.fields[2].blank?
      puts "line fields 2 is:"
      puts line.fields[2]
      puts "----------------------------"
      line.fields[2].scan(/\^+(?<name>[A-Za-z0-9\%\#\-\_\?\/]+)\^?(?<dilution>\d+)?/) { |name,dilution|  
        if transform_expression = lookup_transform(name)
          self.value = eval(transform_expression)
        end
      }
    end

  end
end