Class: RaxmlAlignmentChecker

Inherits:
Raxml
  • Object
show all
Defined in:
lib/rraxml.rb

Instance Attribute Summary

Attributes inherited from Raxml

#binary, #infofile, #name, #ops, #outdir, #phylip, #stderr, #stdout

Instance Method Summary collapse

Methods inherited from Raxml

#after_run, #before_run, #run, #salute

Constructor Details

#initialize(phylipfile) ⇒ RaxmlAlignmentChecker

Returns a new instance of RaxmlAlignmentChecker.



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# File 'lib/rraxml.rb', line 158

def initialize(phylipfile)
  super(phylipfile)
  @binary = 'raxmlHPC-SSE3'
end

Instance Method Details

#complete_call ⇒ Object 



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# File 'lib/rraxml.rb', line 162

def complete_call
  @ops += " -m GTRCAT -f c"
end

#gather_outfiles ⇒ Object 



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# File 'lib/rraxml.rb', line 165

def gather_outfiles
end