Class: Rbfam::Rna

Inherits:
ActiveRecord::Base
  • Object
show all
Defined in:
lib/rbfam/rna.rb

Instance Method Summary collapse

Instance Method Details

#_id ⇒ Object 



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# File 'lib/rbfam/rna.rb', line 37

def _id
  ("%s %s %s" % [accession, from, to]).gsub(/\W+/, "_")
end

#gapped_sequence ⇒ Object 



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# File 'lib/rbfam/rna.rb', line 33

def gapped_sequence
 as_bioseq(read_attribute(:gapped_sequence))
end

#minus_strand? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/rbfam/rna.rb', line 17

def minus_strand?
  !plus_strand?
end

#plus_strand? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/rbfam/rna.rb', line 13

def plus_strand?
  to > from
end

#seq_from ⇒ Object 



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# File 'lib/rbfam/rna.rb', line 21

def seq_from
  [from, to].min
end

#seq_to ⇒ Object 



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# File 'lib/rbfam/rna.rb', line 25

def seq_to
  [from, to].max
end

#strand ⇒ Object 



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# File 'lib/rbfam/rna.rb', line 9

def strand
  plus_strand? ? :plus : :minus
end