Module: MARQ::RankQuery

Defined in:
lib/MARQ/main.rb

Constant Summary collapse

NULL_SIZE = 
10000

Class Method Summary collapse

Class Method Details

.add_pvalues(scores, up_size, down_size) ⇒ Object 



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# File 'lib/MARQ/main.rb', line 268

def self.add_pvalues(scores, up_size, down_size)
  null_scores = Score.null_scores(up_size, down_size, NULL_SIZE)
  Score.add_pvalues(scores, null_scores)
end

.dataset_scores(dataset, up, down) ⇒ Object 



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# File 'lib/MARQ/main.rb', line 245

def self.dataset_scores(dataset, up, down)
  Score.scores_up_down(dataset, up, down)
end

.organism_scores(organism, up, down) ⇒ Object 



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# File 'lib/MARQ/main.rb', line 259

def self.organism_scores(organism, up, down)
  scores = {}
  MARQ::Platform.organism_platforms(organism).each do |platform|
    scores.merge!(platform_scores(MARQ::Name.cross_platform(platform), up, down))
  end

  scores
end

.platform_scores(platform, up, down) ⇒ Object 



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# File 'lib/MARQ/main.rb', line 249

def self.platform_scores(platform, up, down)
  scores = {}
  MARQ::Platform.datasets(platform).each do |dataset|
    dataset = MARQ::Name.cross_platform dataset if MARQ::Name.is_cross_platform?(platform)
    scores.merge!(dataset_scores(dataset, up, down))
  end

  scores
end