Class: Quorum::JobsController

Inherits:
ApplicationController show all
Defined in:
app/controllers/quorum/jobs_controller.rb

Instance Method Summary collapse

Methods included from Sequence::SendSequence

#has_error?, #render_empty, #render_error, #sequence

Methods included from Helpers

#set_flash_message

Instance Method Details

#create ⇒ Object 



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# File 'app/controllers/quorum/jobs_controller.rb', line 15

def create
  read_sequence_file
  @job = Job.new(params[:job])
  set_sequence

  unless @job.save
    build_blast_jobs
    render :action => "new"
    return
  end
  redirect_to job_path(@job.id)
end

#get_blast_hit_sequence ⇒ Object

Find hit sequence and return worker meta_id for lookup. If the method returns [], try again.



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# File 'app/controllers/quorum/jobs_controller.rb', line 64

def get_blast_hit_sequence
  fetch_data = Job.set_blast_hit_sequence_lookup_values(params)
  data       = Quorum::JobQueueService.queue_fetch_worker(fetch_data)
  respond_with data || []
end

#index ⇒ Object 



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# File 'app/controllers/quorum/jobs_controller.rb', line 7

def index
  redirect_to :action => "new"
end

#new ⇒ Object 



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# File 'app/controllers/quorum/jobs_controller.rb', line 11

def new
  build_blast_jobs
end

#search ⇒ Object

Returns Quorum’s search results.

This method should be used to gather Resque worker results, or user supplied query params.



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# File 'app/controllers/quorum/jobs_controller.rb', line 43

def search
  data = Job.search(params)

  # Respond with :json, :txt (tab delimited Blast results), or GFF3.
  respond_with data.flatten!(1) do |format|
    format.json {
      render :json => Quorum::JobSerializer.as_json(data)
    }
    format.gff {
      render :text => Quorum::JobSerializer.as_gff(data)
    }
    format.txt {
      render :text => Quorum::JobSerializer.as_txt(data)
    }
  end
end

#send_blast_hit_sequence ⇒ Object

Send Blast hit sequence as attached file or render error message as text.

See lib/generators/templates/blast_db.rb for more info.



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# File 'app/controllers/quorum/jobs_controller.rb', line 76

def send_blast_hit_sequence
  data = Workers::System.get_meta(params[:meta_id])
  sequence(data)
end

#show ⇒ Object 



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# File 'app/controllers/quorum/jobs_controller.rb', line 28

def show
  begin
    @jobs = Job.find(params[:id])
  rescue ActiveRecord::RecordNotFound => e
    set_flash_message(:notice, :data_not_found)
    redirect_to :action => "new"
  end
end