Method: ProphetTool#initialize

Defined in:
lib/protk/prophet_tool.rb

#initialize(option_support = [:prefix,:over_write]) ⇒ ProphetTool

Initializes the commandline options



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# File 'lib/protk/prophet_tool.rb', line 20

def initialize(option_support=[:prefix,:over_write])
  
  super(option_support)

  if ( option_support.include? :probability_threshold )
    add_value_option(:probability_threshold,0.05,['--p-thresh val', 'Probability threshold below which PSMs are discarded'])
  end

end