Class: PeptideMod

Inherits:
Object
  • Object
show all
Defined in:
lib/protk/peptide_mod.rb

Instance Attribute Summary collapse

Class Method Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize ⇒ PeptideMod

Returns a new instance of PeptideMod.



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# File 'lib/protk/peptide_mod.rb', line 38

def initialize()

end

Instance Attribute Details

#amino_acid ⇒ Object

Returns the value of attribute amino_acid.



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# File 'lib/protk/peptide_mod.rb', line 10

def amino_acid
  @amino_acid
end

#mass ⇒ Object

Returns the value of attribute mass.



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# File 'lib/protk/peptide_mod.rb', line 11

def mass
  @mass
end

#position ⇒ Object

Fully Modified Sequence



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# File 'lib/protk/peptide_mod.rb', line 9

def position
  @position
end

Class Method Details

.from_data(position, amino_acid, mass) ⇒ Object 



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# File 'lib/protk/peptide_mod.rb', line 27

def from_data(position,amino_acid,mass)
  pepmod = new()
  pepmod.position = position
  pepmod.amino_acid = amino_acid
  pepmod.mass = mass
  pepmod
end

.from_protxml(xmlnode) ⇒ Object

<modification_info modified_peptide=“GFGFVTYSCVEEVDAAMCARPHK“> <mod_aminoacid_mass position=”9“ mass=”160.030600“/> <mod_aminoacid_mass position=”18“ mass=”160.030600“/> </modification_info>



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# File 'lib/protk/peptide_mod.rb', line 20

def from_protxml(xmlnode)
  pepmod = new()
  pepmod.position=xmlnode['position'].to_i
  pepmod.mass=xmlnode['mass'].to_f
  pepmod
end