Method: OodCore::Job::Adapters::Slurm#submit

Defined in:
lib/ood_core/job/adapters/slurm.rb

#submit(script, after: [], afterok: [], afternotok: [], afterany: []) ⇒ String

Submit a job with the attributes defined in the job template instance

Parameters:

  • script (Script)

    script object that describes the script and attributes for the submitted job

  • after (#to_s, Array<#to_s>) (defaults to: [])

    this job may be scheduled for execution at any point after dependent jobs have started execution

  • afterok (#to_s, Array<#to_s>) (defaults to: [])

    this job may be scheduled for execution only after dependent jobs have terminated with no errors

  • afternotok (#to_s, Array<#to_s>) (defaults to: [])

    this job may be scheduled for execution only after dependent jobs have terminated with errors

  • afterany (#to_s, Array<#to_s>) (defaults to: [])

    this job may be scheduled for execution after dependent jobs have terminated

Returns:

  • (String)

    the job id returned after successfully submitting a job

Raises:

See Also:


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# File 'lib/ood_core/job/adapters/slurm.rb', line 467

def submit(script, after: [], afterok: [], afternotok: [], afterany: [])
  after      = Array(after).map(&:to_s)
  afterok    = Array(afterok).map(&:to_s)
  afternotok = Array(afternotok).map(&:to_s)
  afterany   = Array(afterany).map(&:to_s)

  # Set sbatch options
  args = []
  # ignore args, don't know how to do this for slurm
  args.concat ["-H"] if script.submit_as_hold
  args.concat (script.rerunnable ? ["--requeue"] : ["--no-requeue"]) unless script.rerunnable.nil?
  args.concat ["-D", script.workdir.to_s] unless script.workdir.nil?
  args.concat ["--mail-user", script.email.join(",")] unless script.email.nil?
  if script.email_on_started && script.email_on_terminated
    args.concat ["--mail-type", "ALL"]
  elsif script.email_on_started
    args.concat ["--mail-type", "BEGIN"]
  elsif script.email_on_terminated
    args.concat ["--mail-type", "END"]
  elsif script.email_on_started == false && script.email_on_terminated == false
    args.concat ["--mail-type", "NONE"]
  end
  args.concat ["-J", script.job_name] unless script.job_name.nil?
  args.concat ["-i", script.input_path] unless script.input_path.nil?
  args.concat ["-o", script.output_path] unless script.output_path.nil?
  args.concat ["-e", script.error_path] unless script.error_path.nil?
  args.concat ["--reservation", script.reservation_id] unless script.reservation_id.nil?
  args.concat ["-p", script.queue_name] unless script.queue_name.nil?
  args.concat ["--priority", script.priority] unless script.priority.nil?
  args.concat ["--begin", script.start_time.localtime.strftime("%C%y-%m-%dT%H:%M:%S")] unless script.start_time.nil?
  args.concat ["-A", script.accounting_id] unless script.accounting_id.nil?
  args.concat ["-t", seconds_to_duration(script.wall_time)] unless script.wall_time.nil?
  args.concat ['-a', script.job_array_request] unless script.job_array_request.nil?
  args.concat ['--qos', script.qos] unless script.qos.nil?
  args.concat ['--gpus-per-node', script.gpus_per_node] unless script.gpus_per_node.nil?
  # ignore nodes, don't know how to do this for slurm

  # Set dependencies
  depend = []
  depend << "after:#{after.join(":")}"           unless after.empty?
  depend << "afterok:#{afterok.join(":")}"       unless afterok.empty?
  depend << "afternotok:#{afternotok.join(":")}" unless afternotok.empty?
  depend << "afterany:#{afterany.join(":")}"     unless afterany.empty?
  args.concat ["-d", depend.join(",")]               unless depend.empty?

  # Set environment variables
  env = script.job_environment || {}
  args.concat ["--export", export_arg(env, script.copy_environment?)]

  # Set native options
  args.concat script.native if script.native

  # Set content
  content = if script.shell_path.nil?
              script.content
            else
              "#!#{script.shell_path}\n#{script.content}"
            end

  # Submit job
  @slurm.submit_string(content, args: args, env: env)
rescue Batch::Error => e
  raise JobAdapterError, e.message
end