Class: OboParser::OboParser::Stanza

Inherits:
Object
  • Object
show all
Defined in:
lib/obo_parser.rb

Overview

A collection of single lines (Tags)

Direct Known Subclasses

Term, Typedef

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(tags) ⇒ Stanza

Returns a new instance of Stanza.



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# File 'lib/obo_parser.rb', line 58

def initialize(tags)
  @other_tags = []

  while tags.length != 0
    t = tags.shift

    new_tag = OboParser::Tag.new
    
    new_tag.tag = t.tag
    new_tag.value = t.value
    new_tag.comment = t.comment
    new_tag.xrefs = t.xrefs 

    case new_tag.tag
    when 'id' 
      @id = new_tag
    when 'name'
      @name = new_tag
    when 'def'
      @def = new_tag
    else
      if new_tag.tag == 'relationship'
        new_tag.related_term = t.related_term
        new_tag.relation = t.relation
      end

      @other_tags.push(new_tag)
    end
  end
end

Instance Attribute Details

#def ⇒ Object

Make special reference to several specific types of tags (:name, :id), subclasses will remove additional special typs from :other_tags



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# File 'lib/obo_parser.rb', line 56

def def
  @def
end

#id ⇒ Object

Make special reference to several specific types of tags (:name, :id), subclasses will remove additional special typs from :other_tags



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# File 'lib/obo_parser.rb', line 56

def id
  @id
end

#name ⇒ Object

Make special reference to several specific types of tags (:name, :id), subclasses will remove additional special typs from :other_tags



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# File 'lib/obo_parser.rb', line 56

def name
  @name
end

#other_tags ⇒ Object

Make special reference to several specific types of tags (:name, :id), subclasses will remove additional special typs from :other_tags



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# File 'lib/obo_parser.rb', line 56

def other_tags
  @other_tags
end

Instance Method Details

#tags_named(tag_name = nil) ⇒ Object

Convienience methods



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# File 'lib/obo_parser.rb', line 91

def tags_named(tag_name = nil)
  return nil if tag_name.nil?
  result = []
  @other_tags.each do |t|
    result.push(t) if (t.tag == tag_name)
  end
  result
end