Method: Bio::PTS1#exec

Defined in:
lib/bio/appl/pts1.rb

#exec(query) ⇒ Object

Executes the query request and returns result output in Bio::PTS1::Report. The query argument is available both aSting in fasta format text and aBio::FastaFormat.

Examples

require 'bio'
pts1 = Bio::PTS1.new
pts1.exec(">title\nKLMFKTEGPDSD")

pts1.exec(Bio::FastaFormat.new(">title\nKLMFKTEGPDSD"))



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# File 'lib/bio/appl/pts1.rb', line 142

def exec(query)
  seq = set_sequence_in_fastaformat(query)
  
  @form_data = {'function' => @function.values.join(''),
                'sequence' => seq.seq,
                'name'     => seq.definition }
  @uri = URI.parse(["http:/", @host, @cgi_path].join('/'))

  result = Bio::Command.post_form(@uri, @form_data)
  @output = Report.new(result.body)
  
  return @output
end