Class: Ms::Sequest::Sqt::Match::Percolator

Inherits:
Ms::Sequest::Sqt::Match show all
Defined in:
lib/ms/sequest/sqt.rb

Constant Summary

Constants inherited from Ms::Sequest::Sqt::Match

Leader

Instance Method Summary collapse

Methods inherited from Ms::Sequest::Sqt::Match

#from_line, #proteins

Instance Method Details

#negative_q_value ⇒ Object 



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# File 'lib/ms/sequest/sqt.rb', line 365

def negative_q_value
  self[5]
end

#negative_q_value=(arg) ⇒ Object 



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# File 'lib/ms/sequest/sqt.rb', line 368

def negative_q_value=(arg)
  self[5] = arg
end

#percolator_score ⇒ Object

we will keep access to these old terms since we can then access routines that sort on xcorr… undef_method :xcorr undef_method :xcorr= undef_method :sp undef_method :sp=



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# File 'lib/ms/sequest/sqt.rb', line 359

def percolator_score
  self[4]
end

#percolator_score=(score) ⇒ Object 



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# File 'lib/ms/sequest/sqt.rb', line 362

def percolator_score=(score)
  self[4] = score
end

#probability ⇒ Object

for compatibility with scripts that want this guy



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# File 'lib/ms/sequest/sqt.rb', line 375

def probability
  -self[5]
end

#q_value ⇒ Object 



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# File 'lib/ms/sequest/sqt.rb', line 371

def q_value
  -self[5]
end