Class: Ms::Ident::ProteinHit

Inherits:

Protein

• Object
• Protein
• Ms::Ident::ProteinHit

Defined in:

lib/ms/ident/protein_hit.rb

Instance Attribute Summary

• #peptide_hits ⇒ Object

  Returns the value of attribute peptide_hits.

Attributes inherited from Protein

#description, #id, #seq

Instance Method Summary

• #gene_id ⇒ Object

  if the GN=(+) regexp is found in the description, returns the first match, or nil if not found.

• #initialize(id = nil, peptide_hits = []) ⇒ ProteinHit constructor

  A new instance of ProteinHit.

Constructor Details

#initialize(id = nil, peptide_hits = []) ⇒ ProteinHit

Returns a new instance of ProteinHit.

# File 'lib/ms/ident/protein_hit.rb', line 10

def initialize(id=nil, peptide_hits=[])
  @peptide_hits = peptide_hits
  @id = id
end

Instance Attribute Details

#peptide_hits ⇒ Object

Returns the value of attribute peptide_hits.

# File 'lib/ms/ident/protein_hit.rb', line 8

def peptide_hits
  @peptide_hits
end

Instance Method Details

#gene_id ⇒ Object

if the GN=(+) regexp is found in the description, returns the first match, or nil if not found

# File 'lib/ms/ident/protein_hit.rb', line 17

def gene_id
  description.andand.match(/ GN=(\w+) ?/)[1]
end